Karathanou Konstantina, Bondar Ana-Nicoleta
Freie Universität Berlin, Department of Physics, Theoretical Molecular Biophysics Group, Arnimallee 14, D-14195, Berlin, Germany.
J Membr Biol. 2018 Jun;251(3):461-473. doi: 10.1007/s00232-018-0023-1. Epub 2018 Mar 9.
Lipid membrane interfaces are complex environments that host essential cellular processes such as binding of proteins or drug molecules. A key open question is how water molecules at the interface of membranes with anionic lipids participate in protein binding. To address this question, we studied the dynamics of water hydrogen bonding at the interface of membranes composed of phosphatidylcholine and phosphatidylglycerol, and implemented an algorithm to identify hydrogen-bonded networks at the interface of a lipid membrane, and to characterize their dynamics and linear connections. We find that the membrane interface is characterized by a rich network of hydrogen-bonded water chains that bridge lipid headgroups, some of which form transient lipid clusters. Water-mediated bridges between with lipid phosphate groups are dynamic, with residence lifetimes on the order of picoseconds. These clusters of water/lipid headgroup hydrogen bonds could provide a platform for the binding of proteins or of drug molecules with cationic groups.
脂质膜界面是复杂的环境,承载着诸如蛋白质或药物分子结合等重要的细胞过程。一个关键的开放性问题是,带负电荷脂质的膜界面处的水分子如何参与蛋白质结合。为了解决这个问题,我们研究了由磷脂酰胆碱和磷脂酰甘油组成的膜界面处水氢键的动力学,并实现了一种算法,用于识别脂质膜界面处的氢键网络,并表征其动力学和线性连接。我们发现,膜界面的特征是存在丰富的氢键水链网络,这些水链连接着脂质头部基团,其中一些形成了瞬时脂质簇。脂质磷酸基团之间由水介导的桥是动态的,其驻留寿命在皮秒量级。这些水/脂质头部基团氢键簇可以为蛋白质或带有阳离子基团的药物分子的结合提供一个平台。