Dance Ian
School of Chemistry , University of New South Wales , Sydney 2052 , Australia . Email:
Chem Sci. 2015 Feb 1;6(2):1433-1443. doi: 10.1039/c4sc03223c. Epub 2014 Dec 8.
The [NiFe] hydrogenases use an electron transfer relay of three FeS clusters - proximal, medial and distal - to release the electrons from the principal reaction, H → 2H + 2e, that occurs at the Ni-Fe catalytic site. This site is normally inactivated by O, but the subclass of O-tolerant [NiFe] hydrogenases are able to counter this inactivation through the agency of an unusual and unprecedented proximal cluster, with composition [FeS(S)], that is able to transfer two electrons back to the Ni-Fe site and effect crucial reduction of O-derived species and thereby reactivate the Ni-Fe site. This proximal cluster gates both the direction and the number of electrons flowing through it, and can reverse the normal flow during O attack. The unusual structures and redox potentials of the proximal cluster are known: a structural change in the proximal cluster causes changes in its electron-transfer potentials. Using protein structure analysis and density functional simulations, this paper identifies a closed protonic system comprising the proximal cluster, some contiguous residues, and a proton reservoir, and proposes that it is activated by O-induced conformational change at the Ni-Fe site. This change is linked to a key histidine residue which then causes protonation of the proximal cluster, and migration of this proton to a key μ-S atom. The resulting SH group causes the required structural change at the proximal cluster, modifying its redox potentials, and leads to the reversed electron flow back to the Ni-Fe site. This cycle is reversible, and the protons involved are independent of those used or produced in reactions at the active site. Existing experimental support for this model is cited, and new testing experiments are suggested.
[NiFe]氢化酶利用由三个铁硫簇(近端、中间和远端)组成的电子传递中继系统,从主要反应H→2H⁺ + 2e⁻中释放电子,该反应发生在镍铁催化位点。该位点通常会被氧气灭活,但耐氧[NiFe]氢化酶亚类能够通过一种不同寻常且前所未有的近端簇(组成为[FeS(S)])来对抗这种灭活作用,该近端簇能够将两个电子转移回镍铁位点,并对氧衍生物种进行关键还原,从而使镍铁位点重新激活。这个近端簇控制着流经它的电子的方向和数量,并且在氧气攻击期间可以逆转正常的电子流动。近端簇不同寻常的结构和氧化还原电位是已知的:近端簇的结构变化会导致其电子转移电位发生变化。本文通过蛋白质结构分析和密度泛函模拟,确定了一个由近端簇、一些相邻残基和一个质子库组成的封闭质子系统,并提出它是由镍铁位点处氧气诱导的构象变化激活的。这种变化与一个关键的组氨酸残基相关联,该残基随后导致近端簇质子化,并使这个质子迁移到一个关键的μ-S原子上。由此产生的SH基团在近端簇处引起所需的结构变化,改变其氧化还原电位,并导致电子反向流回镍铁位点。这个循环是可逆的,并且所涉及的质子与活性位点反应中使用或产生的质子无关。文中引用了该模型现有的实验支持,并提出了新的测试实验。