Brewster L R, Dale J J, Guttridge T L, Gruber S H, Hansell A C, Elliott M, Cowx I G, Whitney N M, Gleiss A C
1Bimini Biological Field Station Foundation, South Bimini, Bahamas.
2Institute of Estuarine and Coastal Studies, University of Hull, Hull, HU6 7RX UK.
Mar Biol. 2018;165(4):62. doi: 10.1007/s00227-018-3318-y. Epub 2018 Mar 8.
Discerning behaviours of free-ranging animals allows for quantification of their activity budget, providing important insight into ecology. Over recent years, accelerometers have been used to unveil the cryptic lives of animals. The increased ability of accelerometers to store large quantities of high resolution data has prompted a need for automated behavioural classification. We assessed the performance of several machine learning (ML) classifiers to discern five behaviours performed by accelerometer-equipped juvenile lemon sharks () at Bimini, Bahamas (25°44'N, 79°16'W). The sharks were observed to exhibit chafing, burst swimming, headshaking, resting and swimming in a semi-captive environment and these observations were used to ground-truth data for ML training and testing. ML methods included logistic regression, an artificial neural network, two random forest models, a gradient boosting model and a voting ensemble (VE) model, which combined the predictions of all other (base) models to improve classifier performance. The macro-averaged -measure, an indicator of classifier performance, showed that the VE model improved overall classification (-measure 0.88) above the strongest base learner model, gradient boosting (0.86). To test whether the VE model provided biologically meaningful results when applied to accelerometer data obtained from wild sharks, we investigated headshaking behaviour, as a proxy for prey capture, in relation to the variables: time of day, tidal phase and season. All variables were significant in predicting prey capture, with predations most likely to occur during early evening and less frequently during the dry season and high tides. These findings support previous hypotheses from sporadic visual observations.
识别自由放养动物的行为有助于量化它们的活动预算,从而为生态学提供重要的见解。近年来,加速度计已被用于揭示动物隐秘的生活。加速度计存储大量高分辨率数据的能力不断提高,这就催生了对自动行为分类的需求。我们评估了几种机器学习(ML)分类器的性能,以识别巴哈马群岛比米尼(北纬25°44′,西经79°16′)配备加速度计的幼年柠檬鲨()所表现出的五种行为。在半圈养环境中观察到这些鲨鱼表现出摩擦、爆发式游泳、摇头、休息和游动,这些观察结果被用作机器学习训练和测试的真实数据。机器学习方法包括逻辑回归、人工神经网络、两种随机森林模型、梯度提升模型和投票集成(VE)模型,投票集成模型结合了所有其他(基础)模型的预测结果以提高分类器性能。作为分类器性能指标的宏平均F1分数表明,投票集成模型的总体分类(F1分数0.88)优于最强的基础学习模型梯度提升模型(0.86)。为了测试投票集成模型应用于从野生鲨鱼获得的加速度计数据时是否能提供具有生物学意义的结果,我们研究了作为猎物捕获指标的摇头行为与以下变量的关系:一天中的时间、潮汐阶段和季节。所有变量在预测猎物捕获方面都具有显著性,捕食最有可能发生在傍晚,而在旱季和涨潮时发生的频率较低。这些发现支持了之前零星视觉观察得出的假设。