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纳米通道中DNA扩散的斑点理论评估

Evaluation of Blob Theory for the Diffusion of DNA in Nanochannels.

作者信息

Gupta Damini, Bhandari Aditya Bikram, Dorfman Kevin D

机构信息

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

出版信息

Macromolecules. 2018 Mar 13;51(5):1748-1755. doi: 10.1021/acs.macromol.7b02270. Epub 2018 Feb 20.

DOI:10.1021/acs.macromol.7b02270
PMID:29599567
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5868977/
Abstract

We have measured the diffusivity of λ-DNA molecules in approximately square nanochannels with effective sizes ranging from 117 nm to 260 nm at moderate ionic strength. The experimental results do not agree with the non-draining scaling predicted by blob theory. Rather, the data are consistent with the predictions of previous simulations of the Kirkwood diffusivity of a discrete wormlike chain model, without the need for any fitting parameters.

摘要

我们在中等离子强度下,测量了λ-DNA分子在有效尺寸范围从117纳米至260纳米的近似方形纳米通道中的扩散系数。实验结果与斑点理论预测的非排水标度不符。相反,这些数据与之前关于离散蠕虫状链模型的柯克伍德扩散系数模拟的预测结果一致,无需任何拟合参数。

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本文引用的文献

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The Backfolded Odijk Regime for Wormlike Chains Confined in Rectangular Nanochannels.矩形纳米通道中蠕虫状链的后折叠奥迪克 regime 。 (注:这里“Odijk regime”可能是特定的专业术语,可能没有完全对应的非常准确通用的中文表述,保留英文是比较合适的,如果有更准确的中文释义可替换)
Polymers (Basel). 2016 Mar 14;8(3):79. doi: 10.3390/polym8030079.
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The polymer physics of single DNA confined in nanochannels.
二维超材料纳米管道
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Biomicrofluidics. 2015 Dec 29;9(6):064119. doi: 10.1063/1.4938732. eCollection 2015 Nov.
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Kirkwood diffusivity of long semiflexible chains in nanochannel confinement.纳米通道受限环境中长半柔性链的柯克伍德扩散系数
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