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纳米通道中DNA拉伸的单参数标度理论

One-Parameter Scaling Theory for DNA Extension in a Nanochannel.

作者信息

Werner E, Cheong G K, Gupta D, Dorfman K D, Mehlig B

机构信息

Department of Physics, University of Gothenburg, SE-41296 Gothenburg, Sweden.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

出版信息

Phys Rev Lett. 2017 Dec 29;119(26):268102. doi: 10.1103/PhysRevLett.119.268102. Epub 2017 Dec 28.

DOI:10.1103/PhysRevLett.119.268102
PMID:29328690
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5769985/
Abstract

Experiments measuring DNA extension in nanochannels are at odds with even the most basic predictions of current scaling arguments for the conformations of confined semiflexible polymers such as DNA. We show that a theory based on a weakly self-avoiding, one-dimensional "telegraph" process collapses experimental data and simulation results onto a single master curve throughout the experimentally relevant region of parameter space and explains the mechanisms at play.

摘要

在纳米通道中测量DNA伸展的实验结果,甚至与当前关于诸如DNA等受限半柔性聚合物构象的标度论证的最基本预测都不一致。我们表明,一种基于弱自回避的一维“电报式”过程的理论,能将实验数据和模拟结果在整个实验相关的参数空间区域内归并到一条单一的主曲线上,并解释其中起作用的机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/9965aabeef94/nihms931023f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/cea59aa7eecf/nihms931023f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/b31636bd2add/nihms931023f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/e9c2652d60ed/nihms931023f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/9965aabeef94/nihms931023f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/cea59aa7eecf/nihms931023f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/b31636bd2add/nihms931023f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/e9c2652d60ed/nihms931023f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcfd/5769985/9965aabeef94/nihms931023f4.jpg

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引用本文的文献

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本文引用的文献

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The polymer physics of single DNA confined in nanochannels.单链 DNA 在纳米通道中的聚合物物理。
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Extension of nanoconfined DNA: Quantitative comparison between experiment and theory.纳米受限DNA的拉伸:实验与理论之间的定量比较。
Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062701. doi: 10.1103/PhysRevE.92.062701. Epub 2015 Dec 2.
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Experimental evidence of weak excluded volume effects for nanochannel confined DNA.
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Nanoplumbing with 2D Metamaterials.二维超材料纳米管道
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Alpha-Synuclein Modulates the Physical Properties of DNA.α-突触核蛋白调节 DNA 的物理性质。
Chemistry. 2018 Oct 17;24(58):15685-15690. doi: 10.1002/chem.201803933. Epub 2018 Sep 19.
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Distribution of label spacings for genome mapping in nanochannels.纳米通道中基因组图谱标记间距的分布
Biomicrofluidics. 2018 Jun 25;12(3):034115. doi: 10.1063/1.5038417. eCollection 2018 May.
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Evaluation of Blob Theory for the Diffusion of DNA in Nanochannels.纳米通道中DNA扩散的斑点理论评估
Macromolecules. 2018 Mar 13;51(5):1748-1755. doi: 10.1021/acs.macromol.7b02270. Epub 2018 Feb 20.
纳米通道限制DNA的弱排除体积效应的实验证据。
ACS Macro Lett. 2015 Jul;4(7):759-763. doi: 10.1021/acsmacrolett.5b00340. Epub 2015 Jul 2.
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Scaling regimes of a semiflexible polymer in a rectangular channel.矩形通道中半柔性聚合物的标度规律。
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Confined polymers in the extended de Gennes regime.处于扩展德热纳 regime 中的受限聚合物。 (注:这里“regime”不太明确准确对应中文术语,可能需要结合具体语境进一步确定合适译法,比如“状态”“机制”等 )
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