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发展中国家生物质谱核心设施面临的挑战与机遇

Challenges and Opportunities for Biological Mass Spectrometry Core Facilities in the Developing World.

作者信息

Bell Liam, Calder Bridget, Hiller Reinhard, Klein Ashwil, Soares Nelson C, Stoychev Stoyan H, Vorster Barend C, Tabb David L

机构信息

Centre for Proteomic and Genomic Research, Observatory, Cape Town 7925, South Africa.

University of Cape Town, Observatory, Cape Town 7925, South Africa.

出版信息

J Biomol Tech. 2018 Apr;29(1):4-15. doi: 10.7171/jbt.18-2901-003. Epub 2018 Mar 23.

Abstract

The developing world is seeing rapid growth in the availability of biological mass spectrometry (MS), particularly through core facilities. As proteomics and metabolomics becomes locally feasible for investigators in these nations, application areas associated with high burden in these nations, such as infectious disease, will see greatly increased research output. This article evaluates the rapid growth of MS in South Africa (currently approaching 20 laboratories) as a model for establishing MS core facilities in other nations of the developing world. Facilities should emphasize new services rather than new instruments. The reduction of the delays associated with reagent and other supply acquisition would benefit both facilities and the users who make use of their services. Instrument maintenance and repair, often mediated by an in-country business for an international vendor, is also likely to operate on a slower schedule than in the wealthiest nations. A key challenge to facilities in the developing world is educating potential facility users in how best to design experiments for proteomics and metabolomics, what reagents are most likely to introduce problematic artifacts, and how to interpret results from the facility. Here, we summarize the experience of 6 different institutions to raise the level of biological MS available to researchers in South Africa.

摘要

在发展中世界,生物质谱(MS)的可及性正在迅速增长,尤其是通过核心设施实现的。随着蛋白质组学和代谢组学在这些国家对研究人员来说在当地变得可行,与这些国家高负担相关的应用领域,如传染病,将见证研究产出大幅增加。本文评估了南非质谱(目前接近20个实验室)的快速增长情况,将其作为在发展中世界其他国家建立质谱核心设施的一个范例。设施应强调新服务而非新仪器。减少与试剂及其他供应获取相关的延误,将使设施和使用其服务的用户都受益。仪器维护和维修通常由国际供应商在当地的业务来进行,其运作速度也可能比最富裕国家更慢。发展中世界设施面临的一个关键挑战是,要教导潜在的设施用户如何以最佳方式设计蛋白质组学和代谢组学实验、哪些试剂最有可能产生有问题的假象,以及如何解读设施给出的结果。在此,我们总结了6个不同机构的经验,以提高南非研究人员可利用的生物质谱水平。

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