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组蛋白 H3 尾部的构象抑制了 BPTF PHD 指与核小体的结合。

The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome.

机构信息

Department of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, United States.

Department of Physics, Illinois Institute of Technology, Chicago, Illinois.

出版信息

Elife. 2018 Apr 12;7:e31481. doi: 10.7554/eLife.31481.

Abstract

Histone tails harbor a plethora of post-translational modifications that direct the function of chromatin regulators, which recognize them through effector domains. Effector domain/histone interactions have been broadly studied, but largely using peptide fragments of histone tails. Here, we extend these studies into the nucleosome context and find that the conformation adopted by the histone H3 tails is inhibitory to BPTF PHD finger binding. Using NMR spectroscopy and MD simulations, we show that the H3 tails interact robustly but dynamically with nucleosomal DNA, substantially reducing PHD finger association. Altering the electrostatics of the H3 tail via modification or mutation increases accessibility to the PHD finger, indicating that PTM crosstalk can regulate effector domain binding by altering nucleosome conformation. Together, our results demonstrate that the nucleosome context has a dramatic impact on signaling events at the histone tails, and highlights the importance of studying histone binding in the context of the nucleosome.

摘要

组蛋白尾部携带有大量的翻译后修饰,这些修饰可以指导染色质调节剂的功能,而这些调节剂可以通过效应结构域来识别它们。已经广泛研究了效应结构域/组蛋白相互作用,但主要使用组蛋白尾部的肽片段。在这里,我们将这些研究扩展到核小体环境中,并发现组蛋白 H3 尾部的构象对 BPTF PHD 手指结合具有抑制作用。使用 NMR 光谱和 MD 模拟,我们表明 H3 尾部与核小体 DNA 强烈但动态地相互作用,大大减少了 PHD 手指的结合。通过修饰或突变改变 H3 尾部的静电性质会增加 PHD 手指的可及性,表明 PTM 串扰可以通过改变核小体构象来调节效应结构域结合。总之,我们的结果表明核小体环境对组蛋白尾部的信号事件有巨大影响,并强调了在核小体环境中研究组蛋白结合的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3908/5953545/7a769e90f16a/elife-31481-fig1.jpg

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