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HOXA1 的上调促进非小细胞肺癌的肿瘤发生和发展:基于逆转录定量聚合酶链反应和生物信息学分析的综合研究。

Upregulation of HOXA1 promotes tumorigenesis and development of non‑small cell lung cancer: A comprehensive investigation based on reverse transcription-quantitative polymerase chain reaction and bioinformatics analysis.

机构信息

Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530021, P.R. China.

Department of Positron Emission Tomography-Computed Tomography, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530021, P.R. China.

出版信息

Int J Oncol. 2018 Jul;53(1):73-86. doi: 10.3892/ijo.2018.4372. Epub 2018 Apr 16.

Abstract

Homeobox A1 (HOXA1) serves an oncogenic role in multiple cancer types. However, the role of HOXA1 in non‑small cell lung cancer (NSCLC) remains unclear. In the present study, use of reverse transcription-quantitative polymerase chain reaction and the databases of The Cancer Genome Atlas (TCGA), Oncomine, Gene Expression Profiling Interactive Analysis and the Multi Experiment Matrix were combined to assess the expression of HOXA1 and its co-expressed genes in NSCLC. Bioinformatic analyses, such as Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and network and protein-protein interaction analyses, were used to investigate the underlying molecular mechanism effected by the co-expressed genes. Additionally, the potential miRNAs targeting HOXA1 were investigated. The results showed that HOXA1 was upregulated in NSCLC. The area under the curve of HOXA1 indicated a moderate diagnostic value of the HOXA1 level in NSCLC. According to GO and KEGG analyses, the co-expressed genes may be involved in 'dGTP metabolic processes', 'network-forming collagen trimers', 'centromeric DNA binding' and 'the p53 signaling pathway'. Three miRNAs (miR‑181b‑5p, miR‑28‑5p and miR‑181d‑5p) targeting HOXA1 were each predicted by 10 algorithms; miR‑181b and miR‑181d levels were downregulated in LUSC tissues compared with those in normal lung tissues based on data from the TCGA database, and inverse correlations were found between HOXA1 and miR‑181b (r=-0.205, P<0.001) and miR‑181d (r=-0.106, P=0.020). We speculate that HOXA1 may be the direct target of miR‑181b‑5p or miR‑181d‑5p in LUSC, and HOXA1 may serve a significant role in NSCLC by regulating various pathways, particularly the p53 signaling pathway. However, the detailed mechanism should be verified by functional experiments.

摘要

同源盒 A1(HOXA1)在多种癌症类型中发挥致癌作用。然而,HOXA1 在非小细胞肺癌(NSCLC)中的作用尚不清楚。在本研究中,采用逆转录-定量聚合酶链反应以及癌症基因组图谱(TCGA)、Oncomine、基因表达谱交互分析和多实验矩阵数据库,评估 HOXA1 及其共表达基因在 NSCLC 中的表达。采用生物信息学分析,如基因本体论(GO)、京都基因与基因组百科全书(KEGG)以及网络和蛋白质-蛋白质相互作用分析,研究共表达基因影响的潜在分子机制。此外,还研究了针对 HOXA1 的潜在 miRNA。结果显示,HOXA1 在 NSCLC 中上调。HOXA1 曲线下面积表明 HOXA1 水平在 NSCLC 中的诊断价值中等。根据 GO 和 KEGG 分析,共表达基因可能参与“dGTP 代谢过程”、“形成网络的胶原三聚体”、“着丝粒 DNA 结合”和“p53 信号通路”。有 10 种算法预测了 3 个靶向 HOXA1 的 miRNA(miR-181b-5p、miR-28-5p 和 miR-181d-5p);根据 TCGA 数据库的数据,与正常肺组织相比,LUSC 组织中 miR-181b 和 miR-181d 的水平下调,并且 HOXA1 与 miR-181b(r=-0.205,P<0.001)和 miR-181d(r=-0.106,P=0.020)呈负相关。我们推测,在 LUSC 中,HOXA1 可能是 miR-181b-5p 或 miR-181d-5p 的直接靶标,HOXA1 可能通过调节各种途径,特别是 p53 信号通路,在 NSCLC 中发挥重要作用。然而,详细的机制应通过功能实验来验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f69b/5958640/7a491281aeff/IJO-53-01-0073-g00.jpg

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