Yagi Masafumi
Institute of Vegetable and Floriculture Science, NARO, 2-1 Fujimoto, Tsukuba, Ibaraki 305-0852, Japan.
Breed Sci. 2018 Jan;68(1):62-70. doi: 10.1270/jsbbs.17080. Epub 2018 Feb 17.
Genome information is useful for functional analysis of genes, comparative genomic analysis, breeding of new varieties by marker-assisted selection, and map-based gene isolation. Genome-related research in ornamentals plants has been relatively slow to develop because of their heterozygosity or polyploidy. Advances in analytical instruments, such as next-generation sequencers and information processing technologies have revolutionized biology, and have been applied in a large number and variety of species, including ornamental plants. Recently, high-quality whole genome sequences have been reported in plant genetics and physiology studies of model ornamentals, such as those in genus and Japanese morning glory (). In this review, whole genome sequencing and construction of high-density genetic linkage maps based on SNP markers of ornamentals will be discussed. The databases that store this information for ornamentals are also described.
基因组信息对于基因的功能分析、比较基因组分析、基于标记辅助选择的新品种培育以及图位克隆基因非常有用。由于观赏植物的杂合性或多倍体性,其相关基因组研究发展相对缓慢。诸如新一代测序仪等分析仪器以及信息处理技术的进步给生物学带来了变革,并已应用于包括观赏植物在内的大量且多样的物种。最近,在模式观赏植物(如牵牛属植物和日本牵牛)的植物遗传学和生理学研究中报道了高质量的全基因组序列。在本综述中,将讨论观赏植物基于单核苷酸多态性(SNP)标记的全基因组测序和高密度遗传连锁图谱的构建。还将描述存储观赏植物此类信息的数据库。