从患病牙鲆（Paralichthys olivaceus）分离出的多重抗生素耐药副乳房链球菌SPOF3K菌株的全基因组序列
Complete Genome Sequence of Multiple-Antibiotic-Resistant Streptococcus parauberis Strain SPOF3K, Isolated from Diseased Olive Flounder (Paralichthys olivaceus).
作者信息
Lee Yoonhang, Nguyen Thanh Luan, Kim Ahran, Kim Nameun, Roh Heyong Jin, Han Hyun-Ja, Jung Sung-Hee, Cho Mi-Young, Kang Ho Young, Kim Do-Hyung
机构信息
Department of Aquatic Life Medicine, Pukyong National University, Busan, Republic of Korea.
Pathology Research Division, National Institute of Fisheries Science, Busan, Republic of Korea.
出版信息
Genome Announc. 2018 Apr 26;6(17):e00248-18. doi: 10.1128/genomeA.00248-18.
Abstract
Here, we report the complete genome sequence of multiple-antibiotic-resistant strain SPOF3K, isolated from the kidney of a diseased olive flounder in South Korea in 2013. Sequencing using a PacBio platform yielded a circular chromosome of 2,128,740 bp and a plasmid of 23,538 bp, harboring 2,123 and 24 protein-coding genes, respectively.
摘要
在此，我们报告了多重耐药菌株SPOF3K的完整基因组序列，该菌株于2013年从韩国一条患病牙鲆的肾脏中分离得到。使用PacBio平台进行测序，得到了一条2,128,740 bp的环状染色体和一条23,538 bp的质粒，分别含有2,123个和24个蛋白质编码基因。
相似文献
1
Complete Genome Sequence of Multiple-Antibiotic-Resistant Streptococcus parauberis Strain SPOF3K, Isolated from Diseased Olive Flounder (Paralichthys olivaceus).从患病牙鲆（Paralichthys olivaceus）分离出的多重抗生素耐药副乳房链球菌SPOF3K菌株的全基因组序列
Genome Announc. 2018 Apr 26;6(17):e00248-18. doi: 10.1128/genomeA.00248-18.
2
Antibiotic susceptibility and resistance of Streptococcus iniae and Streptococcus parauberis isolated from olive flounder (Paralichthys olivaceus).从牙鲆（Paralichthys olivaceus）中分离出的海豚链球菌和副乳房链球菌的抗生素敏感性与耐药性
Vet Microbiol. 2009 Apr 14;136(1-2):76-81. doi: 10.1016/j.vetmic.2008.10.002. Epub 2008 Oct 14.
3
Comparison of proteome typing and serotyping of Streptococcus parauberis isolates from olive flounder (Paralichthys olivaceus).牙鲆（Paralichthys olivaceus）源副乳房链球菌分离株的蛋白质组分型与血清分型比较
J Microbiol Methods. 2015 Nov;118:168-72. doi: 10.1016/j.mimet.2015.09.015. Epub 2015 Sep 28.
4
Genome Sequence of Streptococcus parauberis Strain KCTC11980, Isolated from Diseased Paralichthys olivaceus.从患病牙鲆中分离出的副无乳链球菌KCTC11980菌株的基因组序列
Genome Announc. 2013 Oct 3;1(5):e00780-13. doi: 10.1128/genomeA.00780-13.
5
Complete Genome Sequences of Streptococcus parauberis Serotype Ia, Ib/Ic, and II Isolates from Diseased Olive Flounder in South Korea.来自韩国患病牙鲆的副无乳链球菌Ia、Ib/Ic和II型菌株的全基因组序列
Microbiol Resour Announc. 2023 Feb 16;12(2):e0105822. doi: 10.1128/mra.01058-22. Epub 2023 Jan 19.
6
Draft genome sequence of multiple antibiotic-resistant isolated from diseased olive flounder () farmed in South Korea.从韩国养殖的患病牙鲆（）中分离出的多重耐药菌的基因组序列草图。
Microbiol Resour Announc. 2024 Feb 15;13(2):e0088623. doi: 10.1128/mra.00886-23. Epub 2024 Jan 8.
7
Effects of phosphoglucomutase gene (PGM) in Streptococcus parauberis on innate immune response and pathogenicity of olive flounder (Paralichthys olivaceus).副乳房链球菌中磷酸葡萄糖变位酶基因（PGM）对牙鲆先天免疫反应和致病性的影响。
Fish Shellfish Immunol. 2014 Dec;41(2):317-25. doi: 10.1016/j.fsi.2014.09.012. Epub 2014 Sep 18.
8
Prevalence and different characteristics of two serotypes of Streptococcus parauberis isolated from the farmed olive flounder, Paralichthys olivaceus (Temminck and Schlegel), in Korea.韩国养殖牙鲆（Temminck 和 Schlegel）中分离出的两种副猪链球菌血清型的流行情况及不同特征。
J Fish Dis. 2011 Oct;34(10):731-9. doi: 10.1111/j.1365-2761.2011.01289.x.
9
Phenotypic characteristics of Streptococcus iniae and Streptococcus parauberis isolated from olive flounder (Paralichthys olivaceus).从牙鲆（Paralichthys olivaceus）分离出的海豚链球菌和副乳房链球菌的表型特征。
FEMS Microbiol Lett. 2009 Apr;293(1):20-7. doi: 10.1111/j.1574-6968.2009.01491.x.
10
Transcriptome analysis unveils survival strategies of Streptococcus parauberis against fish serum.转录组分析揭示了副猪链球菌对抗鱼血清的生存策略。
PLoS One. 2021 May 26;16(5):e0252200. doi: 10.1371/journal.pone.0252200. eCollection 2021.
引用本文的文献
1
Serotype distribution and antibiogram of isolated from fish in South Korea.韩国鱼类分离株的血清型分布及抗菌谱
Microbiol Spectr. 2023 Aug 9;11(5):e0440022. doi: 10.1128/spectrum.04400-22.
2
Diversity of spp. and genomic characteristics of isolated from clinical mastitis of cattle in Bangladesh.从孟加拉国奶牛临床乳腺炎中分离出的[具体菌种]的菌种多样性和基因组特征。
需注意，原文中“spp.”和“ isolated”处信息不完整，以上译文是根据现有内容尽量完整翻译的。
Front Vet Sci. 2023 Jul 18;10:1198393. doi: 10.3389/fvets.2023.1198393. eCollection 2023.
3
Robust Nanozyme-Enzyme Nanosheets-Based Lactate Biosensor for Diagnosing Bacterial Infection in Olive Flounder ().基于稳健纳米酶-酶纳米片的乳酸生物传感器用于诊断大菱鲆（）中的细菌感染。
Biosensors (Basel). 2021 Nov 4;11(11):439. doi: 10.3390/bios11110439.
4
Directed Recovery and Molecular Characterization of Antibiotic Resistance Plasmids from Cheese Bacteria.从奶酪细菌中定向回收和分子特征分析抗生素抗性质粒。
Int J Mol Sci. 2021 Jul 21;22(15):7801. doi: 10.3390/ijms22157801.
5
Transcriptome analysis unveils survival strategies of Streptococcus parauberis against fish serum.转录组分析揭示了副猪链球菌对抗鱼血清的生存策略。
PLoS One. 2021 May 26;16(5):e0252200. doi: 10.1371/journal.pone.0252200. eCollection 2021.
本文引用的文献
1
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
2
The comprehensive antibiotic resistance database.全面抗生素耐药性数据库。
Antimicrob Agents Chemother. 2013 Jul;57(7):3348-57. doi: 10.1128/AAC.00419-13. Epub 2013 May 6.
3
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
4
Towards control of Streptococcus iniae.针对鳗弧菌的控制。
Emerg Infect Dis. 2009 Dec;15(12):1891-6. doi: 10.3201/eid1512.090232.
5
Shifting the genomic gold standard for the prokaryotic species definition.动摇原核生物种定义的基因组黄金标准。
Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19126-31. doi: 10.1073/pnas.0906412106. Epub 2009 Oct 23.
6
Antibiotic susceptibility and resistance of Streptococcus iniae and Streptococcus parauberis isolated from olive flounder (Paralichthys olivaceus).从牙鲆（Paralichthys olivaceus）中分离出的海豚链球菌和副乳房链球菌的抗生素敏感性与耐药性
Vet Microbiol. 2009 Apr 14;136(1-2):76-81. doi: 10.1016/j.vetmic.2008.10.002. Epub 2008 Oct 14.
7
Key role of Mfd in the development of fluoroquinolone resistance in Campylobacter jejuni.Mfd在空肠弯曲菌氟喹诺酮耐药性发展中的关键作用。
PLoS Pathog. 2008 Jun 6;4(6):e1000083. doi: 10.1371/journal.ppat.1000083.
8
eggNOG: automated construction and annotation of orthologous groups of genes.蛋酒（EggNOG）：直系同源基因簇的自动构建与注释
Nucleic Acids Res. 2008 Jan;36(Database issue):D250-4. doi: 10.1093/nar/gkm796. Epub 2007 Oct 16.
9
Analysis of the polysaccharide capsule of the systemic pathogen Streptococcus iniae and its implications in virulence.无乳链球菌这一全身性病原菌的多糖荚膜分析及其在毒力方面的意义。
Infect Immun. 2007 Mar;75(3):1255-64. doi: 10.1128/IAI.01484-06. Epub 2006 Dec 28.
10
Isolation and characterization of Streptococcus sp. from diseased flounder (Paralichthys olivaceus) in Jeju Island.济州岛患病牙鲆（Paralichthys olivaceus）中链球菌属的分离与鉴定
J Vet Sci. 2006 Mar;7(1):53-8. doi: 10.4142/jvs.2006.7.1.53.
Zotero 插件