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已测序的被子植物基因组和基因组数据库。

The Sequenced Angiosperm Genomes and Genome Databases.

作者信息

Chen Fei, Dong Wei, Zhang Jiawei, Guo Xinyue, Chen Junhao, Wang Zhengjia, Lin Zhenguo, Tang Haibao, Zhang Liangsheng

机构信息

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Ministry of Education Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps, Fujian Agriculture and Forestry University, Fuzhou, China.

State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Hangzhou, China.

出版信息

Front Plant Sci. 2018 Apr 13;9:418. doi: 10.3389/fpls.2018.00418. eCollection 2018.

Abstract

Angiosperms, the flowering plants, provide the essential resources for human life, such as food, energy, oxygen, and materials. They also promoted the evolution of human, animals, and the planet earth. Despite the numerous advances in genome reports or sequencing technologies, no review covers all the released angiosperm genomes and the genome databases for data sharing. Based on the rapid advances and innovations in the database reconstruction in the last few years, here we provide a comprehensive review for three major types of angiosperm genome databases, including databases for a single species, for a specific angiosperm clade, and for multiple angiosperm species. The scope, tools, and data of each type of databases and their features are concisely discussed. The genome databases for a single species or a clade of species are especially popular for specific group of researchers, while a timely-updated comprehensive database is more powerful for address of major scientific mysteries at the genome scale. Considering the low coverage of flowering plants in any available database, we propose construction of a comprehensive database to facilitate large-scale comparative studies of angiosperm genomes and to promote the collaborative studies of important questions in plant biology.

摘要

被子植物,即开花植物,为人类生活提供了必不可少的资源,如食物、能源、氧气和材料。它们还推动了人类、动物以及地球的进化。尽管基因组报告或测序技术取得了诸多进展,但尚无综述涵盖所有已发布的被子植物基因组以及用于数据共享的基因组数据库。基于过去几年数据库重建方面的快速进展和创新,在此我们对三种主要类型的被子植物基因组数据库进行全面综述,包括单一物种数据库、特定被子植物分支数据库以及多个被子植物物种数据库。简要讨论了每种类型数据库的范围、工具、数据及其特点。单一物种或物种分支的基因组数据库对特定研究群体特别受欢迎,而及时更新的综合数据库在解决基因组规模的重大科学谜团方面更具威力。鉴于现有任何数据库中开花植物的覆盖范围较低,我们建议构建一个综合数据库,以促进被子植物基因组的大规模比较研究,并推动植物生物学重要问题的合作研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a05/5909171/d61f5d45e523/fpls-09-00418-g0001.jpg

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