Charlebois Daniel A, Diao Junchen, Nevozhay Dmitry, Balázsi Gábor
The Louis and Beatrice Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY, USA.
Department of Systems Biology - Unit 950, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Methods Mol Biol. 2018;1772:25-43. doi: 10.1007/978-1-4939-7795-6_2.
Synthetic biologists aim to design biological systems for a variety of industrial and medical applications, ranging from biofuel to drug production. Synthetic gene circuits regulating efflux pump protein expression can achieve this by driving desired substrates such as biofuels, pharmaceuticals, or other chemicals out of the cell in a precisely controlled manner. However, efflux pumps may introduce implicit negative feedback by pumping out intracellular inducer molecules that control gene circuits, which then can alter gene circuit function. Therefore, synthetic gene circuits must be carefully designed and constructed for precise efflux control. Here, we provide protocols for quantitatively modeling and building synthetic gene constructs for efflux pump regulation.
合成生物学家旨在设计用于各种工业和医学应用的生物系统,从生物燃料到药物生产。调节外排泵蛋白表达的合成基因回路可以通过以精确控制的方式将生物燃料、药物或其他化学物质等所需底物排出细胞来实现这一目标。然而,外排泵可能会通过泵出控制基因回路的细胞内诱导分子引入隐性负反馈,进而改变基因回路功能。因此,必须精心设计和构建合成基因回路以实现精确的外排控制。在此,我们提供了用于定量建模和构建用于外排泵调节的合成基因构建体的方案。