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上下文相关的稳健合成基因电路的重新设计。

Context-dependent redesign of robust synthetic gene circuits.

机构信息

School of Biological and Health System Engineering, Arizona State University, Tempe, AZ 85281, USA.

School of Biological and Health System Engineering, Arizona State University, Tempe, AZ 85281, USA.

出版信息

Trends Biotechnol. 2024 Jul;42(7):895-909. doi: 10.1016/j.tibtech.2024.01.003. Epub 2024 Feb 5.

Abstract

Cells provide dynamic platforms for executing exogenous genetic programs in synthetic biology, resulting in highly context-dependent circuit performance. Recent years have seen an increasing interest in understanding the intricacies of circuit-host relationships, their influence on the synthetic bioengineering workflow, and in devising strategies to alleviate undesired effects. We provide an overview of how emerging circuit-host interactions, such as growth feedback and resource competition, impact both deterministic and stochastic circuit behaviors. We also emphasize control strategies for mitigating these unwanted effects. This review summarizes the latest advances and the current state of host-aware and resource-aware design of synthetic gene circuits.

摘要

细胞为在合成生物学中执行外源遗传程序提供了动态平台,从而导致了高度依赖上下文的电路性能。近年来,人们越来越感兴趣于了解电路-宿主关系的复杂性、它们对合成生物工程工作流程的影响,以及设计减轻不良影响的策略。我们概述了新兴的电路-宿主相互作用,如生长反馈和资源竞争,如何影响确定性和随机性电路行为。我们还强调了减轻这些不良影响的控制策略。这篇综述总结了最新的进展和当前的宿主感知和资源感知的合成基因电路设计的状态。

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