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周围血液基因表达揭示弗里德里希共济失调症患者的炎症转录组特征。

Peripheral blood gene expression reveals an inflammatory transcriptomic signature in Friedreich's ataxia patients.

机构信息

Department of Psychiatry and Semel Institute, University of California, Los Angeles, Los Angeles, CA, USA.

Children's Hospital of Philadelphia, Philadelphia, PA, USA.

出版信息

Hum Mol Genet. 2018 Sep 1;27(17):2965-2977. doi: 10.1093/hmg/ddy198.

Abstract

Transcriptional changes in Friedreich's ataxia (FRDA), a rare and debilitating recessive Mendelian neurodegenerative disorder, have been studied in affected but inaccessible tissues-such as dorsal root ganglia, sensory neurons and cerebellum-in animal models or small patient series. However, transcriptional changes induced by FRDA in peripheral blood, a readily accessible tissue, have not been characterized in a large sample. We used differential expression, association with disability stage, network analysis and enrichment analysis to characterize the peripheral blood transcriptome and identify genes that were differentially expressed in FRDA patients (n = 418) compared with both heterozygous expansion carriers (n = 228) and controls (n = 93 739 individuals in total), or were associated with disease progression, resulting in a disease signature for FRDA. We identified a transcriptional signature strongly enriched for an inflammatory innate immune response. Future studies should seek to further characterize the role of peripheral inflammation in FRDA pathology and determine its relevance to overall disease progression.

摘要

弗里德里希共济失调(FRDA)是一种罕见且使人虚弱的隐性孟德尔神经退行性疾病,其转录变化已在动物模型或小患者系列中研究过,但在难以接近的组织(如背根神经节、感觉神经元和小脑)中进行了研究。然而,在外周血中由 FRDA 引起的转录变化,一种易于获得的组织,尚未在大样本中进行特征描述。我们使用差异表达、与残疾阶段的关联、网络分析和富集分析来描述外周血转录组,并确定在 FRDA 患者(n=418)与杂合扩展携带者(n=228)和对照组(总共 93739 人)相比差异表达的基因,或与疾病进展相关的基因,从而为 FRDA 确定疾病特征。我们发现了一个强烈富集炎症先天免疫反应的转录特征。未来的研究应寻求进一步表征外周炎症在 FRDA 病理学中的作用,并确定其与整体疾病进展的相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eba6/6097013/af5b9696576a/ddy198f1.jpg

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