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本文引用的文献

1
Genome Sequence of sp. Strain EPR-M, a Deep-Sea Hydrothermal Vent Iron Reducer.深海热液喷口铁还原菌EPR-M菌株的基因组序列
Genome Announc. 2017 Jun 8;5(23):e00424-17. doi: 10.1128/genomeA.00424-17.
2
Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō'ihi Seamount.聚焦微生物多样性：对罗伊希海山铁锰结壳的高分辨率分析
Environ Microbiol. 2017 Jan;19(1):301-316. doi: 10.1111/1462-2920.13607. Epub 2017 Jan 23.
3
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
6
Beyond the Calvin cycle: autotrophic carbon fixation in the ocean.超越卡尔文循环：海洋中的自养碳固定。
Ann Rev Mar Sci. 2011;3:261-89. doi: 10.1146/annurev-marine-120709-142712.
7
Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.地杆菌科中的嗜热性：埃氏地热杆菌，新属，新种，一种来自“袋城”热液喷口的新型嗜热地杆菌科成员。
Appl Environ Microbiol. 2003 May;69(5):2985-93. doi: 10.1128/AEM.69.5.2985-2993.2003.

夏威夷罗伊希海山的铁还原菌菌株HR-1的基因组序列

Genome Sequence of sp. Strain HR-1, an Iron Reducer from the Lō'ihi Seamount, Hawai'i.

作者信息

Smith Hillary, Abuyen Karla, Tremblay Jason, Savalia Pratixaben, Pérez-Rodríguez Ileana, Emerson David, Tully Benjamin, Amend Jan

机构信息

Community College Cultivation Cohort, University of Southern California, Los Angeles, California, USA.

Department of Earth Sciences, University of Southern California, Los Angeles, California, USA.

出版信息

Genome Announc. 2018 May 24;6(21):e00339-18. doi: 10.1128/genomeA.00339-18.

DOI:10.1128/genomeA.00339-18
PMID:29798915
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5968728/
Abstract

sp. strain HR-1 was isolated from the Lō'ihi Seamount vent system in the Pacific Ocean at a depth of 1,000 m. Reported here is its 3.84-Mb genome sequence.

摘要

菌株HR-1是从太平洋中深度为1000米的洛希海山喷口系统分离出来的。本文报道了其384万个碱基对的基因组序列。