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Discovery of the leinamycin family of natural products by mining actinobacterial genomes.通过挖掘放线菌基因组发现莱姆素天然产物家族。
Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):E11131-E11140. doi: 10.1073/pnas.1716245115. Epub 2017 Dec 11.
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The Immunosuppressant Brasilicardin: Determination of the Biosynthetic Gene Cluster in the Heterologous Host Amycolatopsis japonicum.免疫抑制剂 Brasilicardin:在异源宿主 Amycolatopsis japonicum 中确定生物合成基因簇。
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Genomic Enzymology: Web Tools for Leveraging Protein Family Sequence-Function Space and Genome Context to Discover Novel Functions.基因组酶学:利用蛋白质家族序列-功能空间和基因组背景发现新功能的网络工具。
Biochemistry. 2017 Aug 22;56(33):4293-4308. doi: 10.1021/acs.biochem.7b00614.
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Cytochromes P450 for natural product biosynthesis in Streptomyces: sequence, structure, and function.链霉菌中用于天然产物生物合成的细胞色素P450:序列、结构与功能
Nat Prod Rep. 2017 Aug 30;34(9):1141-1172. doi: 10.1039/c7np00034k.
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Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era.基因组时代核糖体合成及翻译后修饰肽类天然产物的发现
Curr Opin Chem Biol. 2017 Jun;38:36-44. doi: 10.1016/j.cbpa.2017.02.005. Epub 2017 Mar 2.
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Genome Mining of Streptomyces mobaraensis DSM40847 as a Bleomycin Producer Providing a Biotechnology Platform To Engineer Designer Bleomycin Analogues.木岛链霉菌 DSM40847 的基因组挖掘作为博来霉素的生产者,为工程设计博来霉素类似物提供生物技术平台。
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Strain Prioritization and Genome Mining for Enediyne Natural Products.烯二炔类天然产物的菌株优先级排序与基因组挖掘
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Platensimycin and platencin: Inspirations for chemistry, biology, enzymology, and medicine.扁平霉素和扁平菌素:化学、生物学、酶学及医学的灵感之源。
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9
Structure of the ent-Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase.链霉菌属 Platensis CB00739 中的 ent-贝壳杉烯二磷酸合酶 PtmT2 的结构,一种细菌Ⅱ型二萜合酶。
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Chemical diversity of labdane-type bicyclic diterpene biosynthesis in Actinomycetales microorganisms.放线菌目微生物中半日花烷型双环二萜生物合成的化学多样性
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通过非典型细菌II型二萜合酶的基因组挖掘发现天赐内酯类抗生素

Discovery of the Tiancilactone Antibiotics by Genome Mining of Atypical Bacterial Type II Diterpene Synthases.

作者信息

Dong Liao-Bin, Rudolf Jeffrey D, Deng Ming-Rong, Yan Xiaohui, Shen Ben

机构信息

Department of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA.

Department of Molecular Medicine, Natural Products Library Initiative at The Scripps Research Institute, The Scripps Research Institute, Jupiter, FL, 33458, USA.

出版信息

Chembiochem. 2018 May 27. doi: 10.1002/cbic.201800285.

DOI:10.1002/cbic.201800285
PMID:29806086
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6258353/
Abstract

Although genome mining has advanced the identification, discovery, and study of microbial natural products, the discovery of bacterial diterpenoids continues to lag behind. Herein, we report the identification of 66 putative producers of novel bacterial diterpenoids, and the discovery of the tiancilactone (TNL) family of antibiotics, by genome mining of type II diterpene synthases that do not possess the canonical DXDD motif. The TNLs, which are broad-spectrum antibiotics with moderate activities, are produced by both Streptomyces sp. CB03234 and Streptomyces sp. CB03238 and feature a highly functionalized diterpenoid skeleton that is further decorated with chloroanthranilate and γ-butyrolactone moieties. Genetic manipulation of the tnl gene cluster resulted in TNL congeners, which provided insights into their biosynthesis and structure-activity relationships. This work highlights the biosynthetic potential that bacteria possess to produce diterpenoids and should inspire continued efforts to discover terpenoid natural products from bacteria.

摘要

尽管基因组挖掘推动了微生物天然产物的鉴定、发现及研究,但细菌二萜类化合物的发现仍相对滞后。在此,我们通过对不具有典型DXDD基序的II型二萜合酶进行基因组挖掘,报告了66种新型细菌二萜类化合物推定产生菌的鉴定,以及抗生素天丝内酯(TNL)家族的发现。TNL是一类具有中等活性的广谱抗生素,由链霉菌属CB03234菌株和链霉菌属CB03238菌株产生,其特征是具有高度官能化的二萜骨架,并进一步被氯邻氨基苯甲酸酯和γ-丁内酯部分修饰。对tnl基因簇进行遗传操作产生了TNL同系物,这为其生物合成及构效关系提供了见解。这项工作突出了细菌产生二萜类化合物的生物合成潜力,并应激励人们继续努力从细菌中发现萜类天然产物。