Institute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.
Department of Cell and Metabolic Biology, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany.
PLoS One. 2018 May 30;13(5):e0197185. doi: 10.1371/journal.pone.0197185. eCollection 2018.
Standardized DNA assembly strategies facilitate the generation of multigene constructs from collections of building blocks in plant synthetic biology. A common syntax for hierarchical DNA assembly following the Golden Gate principle employing Type IIs restriction endonucleases was recently developed, and underlies the Modular Cloning and GoldenBraid systems. In these systems, transcriptional units and/or multigene constructs are assembled from libraries of standardized building blocks, also referred to as phytobricks, in several hierarchical levels and by iterative Golden Gate reactions. Here, a toolkit containing further modules for the novel DNA assembly standards was developed. Intended for use with Modular Cloning, most modules are also compatible with GoldenBraid. Firstly, a collection of approximately 80 additional phytobricks is provided, comprising e.g. modules for inducible expression systems, promoters or epitope tags. Furthermore, DNA modules were developed for connecting Modular Cloning and Gateway cloning, either for toggling between systems or for standardized Gateway destination vector assembly. Finally, first instances of a "peripheral infrastructure" around Modular Cloning are presented: While available toolkits are designed for the assembly of plant transformation constructs, vectors were created to also use coding sequence-containing phytobricks directly in yeast two hybrid interaction or bacterial infection assays. The presented material will further enhance versatility of hierarchical DNA assembly strategies.
标准化 DNA 组装策略有助于从植物合成生物学的构建模块集合中生成多基因构建体。最近开发了一种遵循 Golden Gate 原理使用 Type IIS 限制内切酶的分层 DNA 组装的通用语法,这是 Modular Cloning 和 GoldenBraid 系统的基础。在这些系统中,转录单元和/或多基因构建体由标准化构建块(也称为植物砖块)的文库在几个层次上通过迭代 Golden Gate 反应组装而成。在这里,开发了一个包含用于新型 DNA 组装标准的其他模块的工具包。该工具包旨在与 Modular Cloning 一起使用,大多数模块也与 GoldenBraid 兼容。首先,提供了大约 80 个额外的植物砖块的集合,包括例如诱导表达系统、启动子或表位标签的模块。此外,还开发了用于连接 Modular Cloning 和 Gateway 克隆的 DNA 模块,无论是用于在系统之间切换还是用于标准化 Gateway 目的载体组装。最后,提出了 Modular Cloning 周围的“外围基础设施”的第一个实例:虽然现有的工具包是为植物转化构建体的组装而设计的,但创建了载体,以便直接在酵母双杂交相互作用或细菌感染测定中使用包含编码序列的植物砖块。所提供的材料将进一步增强分层 DNA 组装策略的多功能性。