• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

模块化克隆系统的外围基础设施载体和扩展的植物部分。

Peripheral infrastructure vectors and an extended set of plant parts for the Modular Cloning system.

机构信息

Institute for Biology, Department of Plant Genetics, Martin Luther University Halle (Saale), Halle, Germany.

Department of Cell and Metabolic Biology, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany.

出版信息

PLoS One. 2018 May 30;13(5):e0197185. doi: 10.1371/journal.pone.0197185. eCollection 2018.

DOI:10.1371/journal.pone.0197185
PMID:29847550
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5976141/
Abstract

Standardized DNA assembly strategies facilitate the generation of multigene constructs from collections of building blocks in plant synthetic biology. A common syntax for hierarchical DNA assembly following the Golden Gate principle employing Type IIs restriction endonucleases was recently developed, and underlies the Modular Cloning and GoldenBraid systems. In these systems, transcriptional units and/or multigene constructs are assembled from libraries of standardized building blocks, also referred to as phytobricks, in several hierarchical levels and by iterative Golden Gate reactions. Here, a toolkit containing further modules for the novel DNA assembly standards was developed. Intended for use with Modular Cloning, most modules are also compatible with GoldenBraid. Firstly, a collection of approximately 80 additional phytobricks is provided, comprising e.g. modules for inducible expression systems, promoters or epitope tags. Furthermore, DNA modules were developed for connecting Modular Cloning and Gateway cloning, either for toggling between systems or for standardized Gateway destination vector assembly. Finally, first instances of a "peripheral infrastructure" around Modular Cloning are presented: While available toolkits are designed for the assembly of plant transformation constructs, vectors were created to also use coding sequence-containing phytobricks directly in yeast two hybrid interaction or bacterial infection assays. The presented material will further enhance versatility of hierarchical DNA assembly strategies.

摘要

标准化 DNA 组装策略有助于从植物合成生物学的构建模块集合中生成多基因构建体。最近开发了一种遵循 Golden Gate 原理使用 Type IIS 限制内切酶的分层 DNA 组装的通用语法,这是 Modular Cloning 和 GoldenBraid 系统的基础。在这些系统中,转录单元和/或多基因构建体由标准化构建块(也称为植物砖块)的文库在几个层次上通过迭代 Golden Gate 反应组装而成。在这里,开发了一个包含用于新型 DNA 组装标准的其他模块的工具包。该工具包旨在与 Modular Cloning 一起使用,大多数模块也与 GoldenBraid 兼容。首先,提供了大约 80 个额外的植物砖块的集合,包括例如诱导表达系统、启动子或表位标签的模块。此外,还开发了用于连接 Modular Cloning 和 Gateway 克隆的 DNA 模块,无论是用于在系统之间切换还是用于标准化 Gateway 目的载体组装。最后,提出了 Modular Cloning 周围的“外围基础设施”的第一个实例:虽然现有的工具包是为植物转化构建体的组装而设计的,但创建了载体,以便直接在酵母双杂交相互作用或细菌感染测定中使用包含编码序列的植物砖块。所提供的材料将进一步增强分层 DNA 组装策略的多功能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/8edb78c6a99a/pone.0197185.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/cac8d528a6ee/pone.0197185.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/58fbd63bd15e/pone.0197185.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/4daf3e3e8e0d/pone.0197185.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/bd2f24120860/pone.0197185.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/a1c3fcb7b943/pone.0197185.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/8edb78c6a99a/pone.0197185.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/cac8d528a6ee/pone.0197185.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/58fbd63bd15e/pone.0197185.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/4daf3e3e8e0d/pone.0197185.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/bd2f24120860/pone.0197185.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/a1c3fcb7b943/pone.0197185.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb1b/5976141/8edb78c6a99a/pone.0197185.g006.jpg

相似文献

1
Peripheral infrastructure vectors and an extended set of plant parts for the Modular Cloning system.模块化克隆系统的外围基础设施载体和扩展的植物部分。
PLoS One. 2018 May 30;13(5):e0197185. doi: 10.1371/journal.pone.0197185. eCollection 2018.
2
Synthetic DNA Assembly Using Golden Gate Cloning and the Hierarchical Modular Cloning Pipeline.利用 Golden Gate 克隆和分层模块化克隆管道进行合成 DNA 组装。
Curr Protoc Mol Biol. 2020 Mar;130(1):e115. doi: 10.1002/cpmb.115.
3
Multigene Engineering by GoldenBraid Cloning: From Plants to Filamentous Fungi and Beyond.多基因工程通过 GoldenBraid 克隆:从植物到丝状真菌及其他生物。
Curr Protoc Mol Biol. 2020 Mar;130(1):e116. doi: 10.1002/cpmb.116.
4
A golden gate modular cloning toolbox for plants.用于植物的金门模块化克隆工具箱。
ACS Synth Biol. 2014 Nov 21;3(11):839-43. doi: 10.1021/sb4001504. Epub 2014 Feb 20.
5
GoldenBraid: an iterative cloning system for standardized assembly of reusable genetic modules.GoldenBraid:一种迭代克隆系统,用于标准化组装可重复使用的基因模块。
PLoS One. 2011;6(7):e21622. doi: 10.1371/journal.pone.0021622. Epub 2011 Jul 7.
6
GreenGate---a novel, versatile, and efficient cloning system for plant transgenesis.绿盒系统---一种用于植物转基因的新型、通用、高效的克隆系统。
PLoS One. 2013 Dec 20;8(12):e83043. doi: 10.1371/journal.pone.0083043. eCollection 2013.
7
GoldenBraid 2.0: a comprehensive DNA assembly framework for plant synthetic biology.GoldenBraid 2.0:一个用于植物合成生物学的综合性 DNA 组装框架。
Plant Physiol. 2013 Jul;162(3):1618-31. doi: 10.1104/pp.113.217661.
8
Phytobricks: Manual and Automated Assembly of Constructs for Engineering Plants.植物积木:工程植物构建体的手动和自动化组装。
Methods Mol Biol. 2020;2205:179-199. doi: 10.1007/978-1-0716-0908-8_11.
9
Design and construction of multigenic constructs for plant biotechnology using the GoldenBraid cloning strategy.利用GoldenBraid克隆策略设计和构建用于植物生物技术的多基因构建体。
Methods Mol Biol. 2014;1116:133-51. doi: 10.1007/978-1-62703-764-8_10.
10
A modular cloning system for standardized assembly of multigene constructs.一种用于多基因构建体标准化组装的模块化克隆系统。
PLoS One. 2011 Feb 18;6(2):e16765. doi: 10.1371/journal.pone.0016765.

引用本文的文献

1
Engineering for chrysoeriol production using synthetic biology approaches.利用合成生物学方法生产芹菜素的工程学研究。
Front Plant Sci. 2024 Dec 17;15:1458916. doi: 10.3389/fpls.2024.1458916. eCollection 2024.
2
Live Single-Cell Transcriptional Dynamics in Plant Cells.在植物细胞中进行单细胞转录动力学研究。
Methods Mol Biol. 2025;2875:37-58. doi: 10.1007/978-1-0716-4248-1_4.
3
Tailored biosynthesis of diosmin through reconstitution of the flavonoid pathway in .通过在……中重建类黄酮途径实现地奥司明的定制生物合成。 (注:原文句子不完整,“in”后面缺少具体内容)

本文引用的文献

1
Adaptation of the GoldenBraid modular cloning system and creation of a toolkit for the expression of heterologous proteins in yeast mitochondria.金缕梅模块化克隆系统的改编及用于酵母线粒体中外源蛋白表达的工具包的创建。
BMC Biotechnol. 2017 Nov 13;17(1):80. doi: 10.1186/s12896-017-0393-y.
2
Roq1 mediates recognition of the Xanthomonas and Pseudomonas effector proteins XopQ and HopQ1.Roq1 介导对黄单胞菌和假单胞菌效应蛋白 XopQ 和 HopQ1 的识别。
Plant J. 2017 Dec;92(5):787-795. doi: 10.1111/tpj.13715. Epub 2017 Oct 25.
3
Dissecting virulence function from recognition: cell death suppression in Nicotiana benthamiana by XopQ/HopQ1-family effectors relies on EDS1-dependent immunity.
Front Plant Sci. 2024 Oct 18;15:1464877. doi: 10.3389/fpls.2024.1464877. eCollection 2024.
4
Assembling DNA Plasmids with the Multi-Kingdom (MK) Cloning System.利用多领域(MK)克隆系统组装 DNA 质粒。
Methods Mol Biol. 2025;2850:467-479. doi: 10.1007/978-1-0716-4220-7_26.
5
Golden Gate Cloning of MoClo Standard Parts.金门克隆 MoClo 标准件。
Methods Mol Biol. 2025;2850:1-19. doi: 10.1007/978-1-0716-4220-7_1.
6
Characterization of the ZCTs, a subgroup of Cys2-His2 zinc finger transcription factors regulating alkaloid biosynthesis in Catharanthus roseus.长春花中调控生物碱生物合成的Cys2-His2锌指转录因子亚组ZCTs的特性分析
Plant Cell Rep. 2024 Aug 8;43(9):209. doi: 10.1007/s00299-024-03295-8.
7
Posttranslational regulation of photosynthetic activity via the TOR kinase in plants.植物中通过 TOR 激酶对光合作用活性的翻译后调控。
Sci Adv. 2024 Jun 21;10(25):eadj3268. doi: 10.1126/sciadv.adj3268. Epub 2024 Jun 19.
8
Greater than the sum of their parts: an overview of the AvrRps4 effector family.大于其各部分之和:AvrRps4效应蛋白家族概述
Front Plant Sci. 2024 May 10;15:1400659. doi: 10.3389/fpls.2024.1400659. eCollection 2024.
9
Functional Analysis of Plant Monosaccharide Transporters Using a Simple Growth Complementation Assay in Yeast.利用酵母中简单的生长互补试验对植物单糖转运蛋白进行功能分析
Bio Protoc. 2023 Aug 5;13(15):e4733. doi: 10.21769/BioProtoc.4733.
10
Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two.利用SpCas9和多个引导RNA在拟南芥中进行靶向基因缺失:四个比两个更好。
Plant Methods. 2023 Mar 28;19(1):30. doi: 10.1186/s13007-023-01010-4.
从识别中剖析毒力功能:XopQ/HopQ1家族效应子对本氏烟草细胞死亡的抑制依赖于EDS1介导的免疫反应
Plant J. 2017 Aug;91(3):430-442. doi: 10.1111/tpj.13578. Epub 2017 Jun 1.
4
Behind the lines-actions of bacterial type III effector proteins in plant cells.幕后故事——细菌III型效应蛋白在植物细胞中的作用
FEMS Microbiol Rev. 2016 Nov 1;40(6):894-937. doi: 10.1093/femsre/fuw026.
5
The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus.IQD家族的钙调蛋白结合蛋白将钙信号与微管、膜亚结构域和细胞核联系起来。
Plant Physiol. 2017 Mar;173(3):1692-1708. doi: 10.1104/pp.16.01743. Epub 2017 Jan 23.
6
GB3.0: a platform for plant bio-design that connects functional DNA elements with associated biological data.GB3.0:一个将功能性DNA元件与相关生物数据相连接的植物生物设计平台。
Nucleic Acids Res. 2017 Feb 28;45(4):2196-2209. doi: 10.1093/nar/gkw1326.
7
Non-host Resistance Induced by the Effector XopQ Is Widespread within the Genus and Functionally Depends on EDS1.由效应蛋白XopQ诱导的非寄主抗性在该属内广泛存在且在功能上依赖于EDS1。
Front Plant Sci. 2016 Nov 30;7:1796. doi: 10.3389/fpls.2016.01796. eCollection 2016.
8
Generation of chromosomal deletions in dicotyledonous plants employing a user-friendly genome editing toolkit.利用用户友好型基因组编辑工具包在双子叶植物中产生染色体缺失
Plant J. 2017 Jan;89(1):155-168. doi: 10.1111/tpj.13319. Epub 2016 Nov 14.
9
EcoFlex: A Multifunctional MoClo Kit for E. coli Synthetic Biology.EcoFlex:用于大肠杆菌合成生物学的多功能模块化克隆试剂盒。
ACS Synth Biol. 2016 Oct 21;5(10):1059-1069. doi: 10.1021/acssynbio.6b00031. Epub 2016 May 2.
10
Artificial Agrobacterium tumefaciens strains exhibit diverse mechanisms to repress Xanthomonas oryzae pv. oryzae-induced hypersensitive response and non-host resistance in Nicotiana benthamiana.人工根癌农杆菌菌株表现出多种机制来抑制水稻白叶枯病菌在本氏烟草中诱导的过敏反应和非寄主抗性。
Mol Plant Pathol. 2017 May;18(4):489-502. doi: 10.1111/mpp.12411. Epub 2016 Jun 9.