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非结构化环境中的 RNA-蛋白质相互作用。

RNA-protein interactions in an unstructured context.

机构信息

Department of Structural and Computational Biology, Max F. Perutz Laboratories, University of Vienna, Austria.

MM Shemyakin and Yu A Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia.

出版信息

FEBS Lett. 2018 Sep;592(17):2901-2916. doi: 10.1002/1873-3468.13116. Epub 2018 Jun 21.

Abstract

Despite their importance, our understanding of noncovalent RNA-protein interactions is incomplete. This especially concerns the binding between RNA and unstructured protein regions, a widespread class of such interactions. Here, we review the recent experimental and computational work on RNA-protein interactions in an unstructured context with a particular focus on how such interactions may be shaped by the intrinsic interaction affinities between individual nucleobases and protein side chains. Specifically, we articulate the claim that the universal genetic code reflects the binding specificity between nucleobases and protein side chains and that, in turn, the code may be seen as the Rosetta stone for understanding RNA-protein interactions in general.

摘要

尽管它们很重要,但我们对非共价 RNA-蛋白质相互作用的理解并不完整。这尤其涉及到 RNA 与无结构蛋白质区域之间的结合,这是此类相互作用的广泛类别。在这里,我们回顾了最近在无结构环境下 RNA-蛋白质相互作用的实验和计算工作,特别关注单个碱基和蛋白质侧链之间的固有相互亲和力如何塑造这种相互作用。具体来说,我们提出了这样的观点,即普遍遗传密码反映了碱基和蛋白质侧链之间的结合特异性,反过来,该密码可以被视为理解一般 RNA-蛋白质相互作用的罗塞塔石碑。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3038/6175095/0af4cd2adf33/FEB2-592-2901-g001.jpg

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