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[物种名称]细胞色素P450的全基因组分析:注释与进化关系

Genome-wide analysis of cytochrome P450s of spp.: annotation and evolutionary relationships.

作者信息

Chadha Sonia, Mehetre Sayaji T, Bansal Ravindra, Kuo Alan, Aerts Andrea, Grigoriev Igor V, Druzhinina Irina S, Mukherjee Prasun K

机构信息

1Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085 India.

2U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 USA.

出版信息

Fungal Biol Biotechnol. 2018 Jun 4;5:12. doi: 10.1186/s40694-018-0056-3. eCollection 2018.

Abstract

BACKGROUND

Cytochrome P450s form an important group of enzymes involved in xenobiotics degradation and metabolism, both primary and secondary. These enzymes are also useful in industry as biotechnological tools for bioconversion and a few are reported to be involved in pathogenicity. spp. are widely used in industry and agriculture and are known for their biosynthetic potential of a large number of secondary metabolites. For realising the full biosynthetic potential of an organism, it is important to do a genome-wide annotation and cataloguing of these enzymes.

RESULTS

Here, we have studied the genomes of seven species (, , , , , and ) and identified a total of 477 cytochrome P450s. We present here the classification, evolution and structure as well as predicted function of these proteins. This study would pave the way for functional characterization of these groups of enzymes and will also help in realization of their full economic potential.

CONCLUSION

Our CYPome annotation and evolutionary studies of the seven species now provides opportunities for exploration of research-driven strategies to select species for various applications especially in relation to secondary metabolism and degradation of environmental pollutants.

摘要

背景

细胞色素P450是参与外源性物质初级和次级降解及代谢的重要酶类。这些酶在工业上作为生物转化的生物技术工具也很有用,并且据报道有一些与致病性有关。 属在工农业中广泛使用,以其大量次生代谢产物的生物合成潜力而闻名。为了充分发挥生物体的生物合成潜力,对这些酶进行全基因组注释和编目很重要。

结果

在这里,我们研究了七个物种( 、 、 、 、 、 和 )的基因组,共鉴定出477种细胞色素P450。我们在此展示了这些蛋白质的分类、进化、结构以及预测功能。这项研究将为这些酶类的功能表征铺平道路,也将有助于实现它们的全部经济潜力。

结论

我们对七个 物种的细胞色素P450组注释和进化研究现在为探索研究驱动的策略提供了机会,以便选择 物种用于各种应用,特别是与次生代谢和环境污染物降解相关的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2981/5985579/3171d566bd54/40694_2018_56_Fig1_HTML.jpg

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