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限制性酶切筛选有助于高效检测CRISPR在……中引入的定点突变。

Restriction digest screening facilitates efficient detection of site-directed mutations introduced by CRISPR in .

作者信息

Evans Ben A, Smith Olivia L, Pickerill Ethan S, York Mary K, Buenconsejo Kristen J P, Chambers Antonio E, Bernstein Douglas A

机构信息

Department of Biology, Ball State University, Muncie, IN, United States of America.

Department of Microbiology and Immunology, Drexel University, Philadelphia, PA, United States of America.

出版信息

PeerJ. 2018 Jun 6;6:e4920. doi: 10.7717/peerj.4920. eCollection 2018.

Abstract

Introduction of point mutations to a gene of interest is a powerful tool when determining protein function. CRISPR-mediated genome editing allows for more efficient transfer of a desired mutation into a wide range of model organisms. Traditionally, PCR amplification and DNA sequencing is used to determine if isolates contain the intended mutation. However, mutation efficiency is highly variable, potentially making sequencing costly and time consuming. To more efficiently screen for correct transformants, we have identified restriction enzymes sites that encode for two identical amino acids or one or two stop codons. We used CRISPR to introduce these restriction sites directly upstream of the Zn-binding domain, a known regulator of filamentation. While repair templates coding for different restriction sites were not equally successful at introducing mutations, restriction digest screening enabled us to rapidly identify isolates with the intended mutation in a cost-efficient manner. In addition, mutated isolates have clear defects in filamentation and virulence compared to wild type . Our data suggest restriction digestion screening efficiently identifies point mutations introduced by CRISPR and streamlines the process of identifying residues important for a phenotype of interest.

摘要

在确定蛋白质功能时,将点突变引入目标基因是一种强大的工具。CRISPR介导的基因组编辑能够更高效地将所需突变导入多种模式生物中。传统上,使用PCR扩增和DNA测序来确定分离株是否包含预期的突变。然而,突变效率差异很大,这可能使测序成本高昂且耗时。为了更有效地筛选正确的转化体,我们确定了编码两个相同氨基酸或一个或两个终止密码子的限制性酶切位点。我们使用CRISPR将这些限制性位点直接引入锌结合结构域的上游,锌结合结构域是已知的丝状化调节因子。虽然编码不同限制性位点的修复模板在引入突变方面并非同样成功,但限制性酶切筛选使我们能够以经济高效的方式快速鉴定出具有预期突变的分离株。此外,与野生型相比,突变分离株在丝状化和毒力方面存在明显缺陷。我们的数据表明,限制性酶切筛选能够有效地鉴定由CRISPR引入的点突变,并简化了鉴定对感兴趣表型重要的残基的过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/812c/5994162/0bae2d673a3f/peerj-06-4920-g001.jpg

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