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与小鼠腭裂相关的基因数据集。

Gene datasets associated with mouse cleft palate.

作者信息

Suzuki Akiko, Jun Goo, Abdallah Nada, Gajera Mona, Iwata Junichi

机构信息

Department of Diagnostic & Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, Houston, TX, USA.

Center for Craniofacial Research, The University of Texas Health Science Center at Houston, Houston, TX, USA.

出版信息

Data Brief. 2018 Mar 14;18:655-673. doi: 10.1016/j.dib.2018.03.010. eCollection 2018 Jun.

DOI:10.1016/j.dib.2018.03.010
PMID:29896534
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5996166/
Abstract

This article presents data on genes associated with cleft palate (CP), retrieved through both a full-text systematic review and a mouse genome informatics (MGI) database search. In order to group CP-associated genes according to function, pathway, biological process, and cellular component, the genes were analyzed using category enrichment bioinformatics tools, the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO). This approach provides invaluable opportunities for the identification of candidate pathways and genes in CP research.

摘要

本文展示了通过全文系统综述和小鼠基因组信息学(MGI)数据库检索获得的与腭裂(CP)相关的基因数据。为了根据功能、通路、生物学过程和细胞成分对CP相关基因进行分组,使用了类别富集生物信息学工具、京都基因与基因组百科全书(KEGG)和基因本体论(GO)对这些基因进行分析。这种方法为腭裂研究中候选通路和基因的识别提供了宝贵的机会。

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Gene datasets associated with mouse cleft palate.与小鼠腭裂相关的基因数据集。
Data Brief. 2018 Mar 14;18:655-673. doi: 10.1016/j.dib.2018.03.010. eCollection 2018 Jun.
2
Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis.与小鼠腭裂相关的基因和微小RNA:系统评价与生物信息学分析
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引用本文的文献

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Gene-Environment Interplay and MicroRNAs in Cleft Lip and Cleft Palate.唇腭裂中的基因-环境相互作用与微小RNA
Oral Sci Int. 2021 Jan;18(1):3-13. doi: 10.1002/osi2.1072. Epub 2020 Jun 15.
2
MicroRNAs and Gene Regulatory Networks Related to Cleft Lip and Palate.微小 RNA 与唇腭裂相关的基因调控网络。
Int J Mol Sci. 2023 Feb 10;24(4):3552. doi: 10.3390/ijms24043552.
3
Suppression of microRNA 124-3p and microRNA 340-5p ameliorates retinoic acid-induced cleft palate in mice.抑制 microRNA 124-3p 和 microRNA 340-5p 可改善维甲酸诱导的小鼠腭裂。
Development. 2022 May 1;149(9). doi: 10.1242/dev.200476. Epub 2022 May 3.
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MicroRNA-124-3p Plays a Crucial Role in Cleft Palate Induced by Retinoic Acid.微小RNA-124-3p在维甲酸诱导的腭裂中起关键作用。
Front Cell Dev Biol. 2021 Jun 9;9:621045. doi: 10.3389/fcell.2021.621045. eCollection 2021.
5
A developmental stage-specific network approach for studying dynamic co-regulation of transcription factors and microRNAs during craniofacial development.一种发育阶段特异性的网络方法,用于研究颅面发育过程中转录因子和 microRNAs 的动态协同调控。
Development. 2020 Dec 24;147(24):dev192948. doi: 10.1242/dev.192948.
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p63 establishes epithelial enhancers at critical craniofacial development genes.p63 可在关键颅面发育基因处建立上皮增强子。
Sci Adv. 2019 May 1;5(5):eaaw0946. doi: 10.1126/sciadv.aaw0946. eCollection 2019 May.

本文引用的文献

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Craniofacial Ciliopathies Reveal Specific Requirements for GLI Proteins during Development of the Facial Midline.颅面纤毛病揭示了面部中线发育过程中GLI蛋白的特定需求。
PLoS Genet. 2016 Nov 1;12(11):e1006351. doi: 10.1371/journal.pgen.1006351. eCollection 2016 Nov.
2
Gene Mutations Associated with Temporomandibular Joint Disorders: A Systematic Review.与颞下颌关节紊乱相关的基因突变:一项系统综述。
OAlib. 2015 Jun;2(6). doi: 10.4236/oalib.1101583. Epub 2015 Jun 3.
3
α5 and αv integrins cooperate to regulate vascular smooth muscle and neural crest functions in vivo.α5和αv整合素在体内协同调节血管平滑肌和神经嵴功能。
Development. 2015 Feb 15;142(4):797-808. doi: 10.1242/dev.117572.
4
Tak1, Smad4 and Trim33 redundantly mediate TGF-β3 signaling during palate development.Tak1、Smad4和Trim33在腭部发育过程中冗余介导TGF-β3信号传导。
Dev Biol. 2015 Feb 15;398(2):231-41. doi: 10.1016/j.ydbio.2014.12.006. Epub 2014 Dec 16.
5
Multiple tissue-specific requirements for the BMP antagonist Noggin in development of the mammalian craniofacial skeleton.多种组织特异性要求 BMP 拮抗剂 Noggin 在哺乳动物颅面骨骼发育中的作用。
Dev Biol. 2014 Aug 15;392(2):168-81. doi: 10.1016/j.ydbio.2014.06.006. Epub 2014 Jun 17.
6
Long-range enhancers regulating Myc expression are required for normal facial morphogenesis.长距离增强子调控 Myc 表达对于正常面部形态发生是必需的。
Nat Genet. 2014 Jul;46(7):753-8. doi: 10.1038/ng.2971. Epub 2014 May 25.
7
Disrupting hedgehog and WNT signaling interactions promotes cleft lip pathogenesis.破坏 hedgehog 和 WNT 信号相互作用可促进唇裂的发病机制。
J Clin Invest. 2014 Apr;124(4):1660-71. doi: 10.1172/JCI72688. Epub 2014 Mar 3.
8
Dysphagia and disrupted cranial nerve development in a mouse model of DiGeorge (22q11) deletion syndrome.狄乔治(22q11)缺失综合征小鼠模型中的吞咽困难与颅神经发育异常
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Forward genetics identifies Kdf1/1810019J16Rik as an essential regulator of the proliferation-differentiation decision in epidermal progenitor cells.正向遗传学鉴定出 Kdf1/1810019J16Rik 是表皮祖细胞增殖-分化决策的必需调控因子。
Dev Biol. 2013 Nov 15;383(2):201-13. doi: 10.1016/j.ydbio.2013.09.022. Epub 2013 Sep 25.
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Inactivation of LAR family phosphatase genes Ptprs and Ptprf causes craniofacial malformations resembling Pierre-Robin sequence.LAR 家族磷酸酶基因 Ptprs 和 Ptprf 的失活导致类似于 Pierre-Robin 序列的颅面畸形。
Development. 2013 Aug;140(16):3413-22. doi: 10.1242/dev.094532. Epub 2013 Jul 17.