Key Lab of Reproduction Regulation of NPFPC, Shanghai Institute of Planned Parenthood Research, Institute of Reproduction and Development, Fudan University, Shanghai 300000, P.R. China.
College of Biotechnology, Guilin Medical University, Guilin, Guangxi Zhuang Autonomous Region 541004, P.R. China.
Mol Med Rep. 2018 Aug;18(2):1297-1304. doi: 10.3892/mmr.2018.9112. Epub 2018 May 31.
mRNA has an important role in spermatogenesis and the maintenance of fertility, and may act as a potential biomarker for the clinical diagnosis of infertility. In the present study, potential biomarkers associated with teratozoospermia were screened through systemic bioinformatics analysis. Initially, genome‑wide expression profiles were downloaded from the Gene Expression Omnibus and primary analysis was conducted using R software, which included preprocessing of raw microarray data, transformation between probe ID and gene symbol and identification of differentially expressed genes. Subsequently, a functional enrichment analysis was conducted using the Database for Annotation, Visualization and Integrated Discovery to investigate the biological processes involved in the development of teratozoospermia. Finally, a protein‑protein interaction network of notable differentially expressed genes was constructed and cross‑analysis performed for multiple datasets, to obtain a potential biomarker for teratozoospermia. It was observed that G protein subunit β 3, G protein subunit α o1 and G protein subunit g transducin 1 were upregulated and enriched using Kyoto Encyclopedia of Genes and Genomes (KEGG) in the network and in cross analysis. Furthermore, ribosomal protein S3 (RPS3), RPS5, RPS6, RPS16 and RPS23 were downregulated and enriched using KEGG in teratozoospermia. In conclusion, the results of the present study identified several mRNAs involved in sperm morphological development, which may aid in the understanding and treatment of infertility.
mRNA 在精子发生和生育力维持中具有重要作用,并且可能作为不育症临床诊断的潜在生物标志物。在本研究中,通过系统生物信息学分析筛选与畸形精子症相关的潜在生物标志物。首先,从基因表达综合数据库中下载全基因组表达谱,并使用 R 软件进行初步分析,包括原始微阵列数据的预处理、探针 ID 与基因符号之间的转换以及差异表达基因的鉴定。随后,使用数据库注释、可视化和综合发现对差异表达基因进行功能富集分析,以研究畸形精子症发生发展过程中的生物学过程。最后,构建了显著差异表达基因的蛋白质-蛋白质相互作用网络,并对多个数据集进行交叉分析,以获得畸形精子症的潜在生物标志物。观察到在网络和交叉分析中,G 蛋白亚基β3、G 蛋白亚基αo1 和 G 蛋白转导素 1 通过京都基因与基因组百科全书(KEGG)上调和富集。此外,核糖体蛋白 S3(RPS3)、RPS5、RPS6、RPS16 和 RPS23 在畸形精子症中通过 KEGG 下调和富集。总之,本研究的结果确定了几个参与精子形态发育的 mRNAs,这可能有助于理解和治疗不育症。