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对北极冰川前缘土壤固氮微生物群落的宏基因组学研究。

Metagenomic insights into diazotrophic communities across Arctic glacier forefields.

机构信息

School of Geographical Sciences, University of Bristol, UK.

School of Life Sciences, University of Bristol, UK.

出版信息

FEMS Microbiol Ecol. 2018 Sep 1;94(9). doi: 10.1093/femsec/fiy114.

Abstract

Microbial nitrogen fixation is crucial for building labile nitrogen stocks and facilitating higher plant colonisation in oligotrophic glacier forefield soils. Here, the diazotrophic bacterial community structure across four Arctic glacier forefields was investigated using metagenomic analysis. In total, 70 soil metagenomes were used for taxonomic interpretation based on 185 nitrogenase (nif) sequences, extracted from assembled contigs. The low number of recovered genes highlights the need for deeper sequencing in some diverse samples, to uncover the complete microbial populations. A key group of forefield diazotrophs, found throughout the forefields, was identified using a nifH phylogeny, associated with nifH Cluster I and III. Sequences related most closely to groups including Alphaproteobacteria, Betaproteobacteria, Cyanobacteria and Firmicutes. Using multiple nif genes in a Last Common Ancestor analysis revealed a diverse range of diazotrophs across the forefields. Key organisms identified across the forefields included Nostoc, Geobacter, Polaromonas and Frankia. Nitrogen fixers that are symbiotic with plants were also identified, through the presence of root associated diazotrophs, which fix nitrogen in return for reduced carbon. Additional nitrogen fixers identified in forefield soils were metabolically diverse, including fermentative and sulphur cycling bacteria, halophiles and anaerobes.

摘要

微生物固氮对于建立易变氮库和促进贫营养冰川前缘土壤中高等植物的定殖至关重要。在这里,使用宏基因组分析研究了四个北极冰川前缘的固氮细菌群落结构。总共使用了 70 个土壤宏基因组,根据组装的连续体中提取的 185 个固氮酶(nif)序列进行分类解释。回收基因的数量较少突出表明需要在一些多样化的样本中进行更深层次的测序,以揭示完整的微生物种群。使用 nifH 系统发育学鉴定了一组关键的前缘固氮菌,这些固氮菌存在于整个前缘,与 nifH 簇 I 和 III 相关。与包括α变形菌、β变形菌、蓝细菌和Firmicutes在内的多个组最密切相关的序列。在最后的共同祖先分析中使用多个 nif 基因揭示了整个前缘中存在多种固氮菌。在整个前缘中确定的关键生物包括 Nostoc、Geobacter、Polaromonas 和 Frankia。通过存在与根相关的固氮菌(固氮以换取还原碳),还鉴定了与植物共生的固氮生物。在前沿土壤中鉴定出的其他固氮生物具有代谢多样性,包括发酵和硫循环细菌、嗜盐菌和厌氧菌。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5cb/6054269/247ac00c9ac6/fiy114fig1.jpg

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