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先前被鉴定为长链非编码RNA的转录本中编码的微肽:转录组学和蛋白质组学的新篇章。

Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics.

作者信息

Yeasmin Fouzia, Yada Tetsushi, Akimitsu Nobuyoshi

机构信息

Isotope Science Centre, The University of Tokyo, Tokyo, Japan.

Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Fukuoka, Japan.

出版信息

Front Genet. 2018 Apr 25;9:144. doi: 10.3389/fgene.2018.00144. eCollection 2018.

Abstract

Integrative analysis using omics-based technologies results in the identification of a large number of putative short open reading frames (sORFs) with protein-coding capacity within transcripts previously identified as long noncoding RNAs (lncRNAs) or transcripts of unknown function (TUFs). sORFs were previously overlooked because of their diminutive size and the difficulty of identification by bioinformatics analyses. There is now growing evidence of the existence of potentially functional micropeptides produced from sORFs within cells of diverse species. Recent characterization of a few of these revealed their significant divergent roles in many fundamental biological processes, where some also show important relationships with pathogenesis. Recent works therefore provide new insights for exploring the wealth of information that may lie within sORF-encoded short proteins. Here, we summarize the current progress and view of micropeptides encoded in sORFs of protein-coding genes.

摘要

使用基于组学的技术进行综合分析,结果鉴定出大量假定的短开放阅读框(sORF),这些短开放阅读框存在于先前被鉴定为长链非编码RNA(lncRNA)或功能未知转录本(TUF)的转录本中,具有蛋白质编码能力。由于sORF尺寸微小且难以通过生物信息学分析鉴定,它们之前一直被忽视。现在越来越多的证据表明,不同物种的细胞内存在由sORF产生的具有潜在功能的微肽。最近对其中一些微肽的表征揭示了它们在许多基本生物学过程中具有显著的不同作用,其中一些还与发病机制显示出重要关系。因此,最近的研究工作为探索sORF编码的短蛋白中可能存在的丰富信息提供了新的见解。在这里,我们总结了蛋白质编码基因sORF中编码的微肽的当前进展和观点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b35d/5996887/a2f530dba59f/fgene-09-00144-g0001.jpg

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