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利用 microRNA 网络理解癌症。

Using microRNA Networks to Understand Cancer.

机构信息

Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd. Unit 1950, Houston, TX 77030, USA.

Department of Surgery, Fundeni Hospital, University of Medicine and Pharmacy Carol Davila, Sos. Fundeni nr. 258, Sector 2, 022328 Bucharest, Romania.

出版信息

Int J Mol Sci. 2018 Jun 26;19(7):1871. doi: 10.3390/ijms19071871.

Abstract

Human cancers are characterized by deregulated expression of multiple microRNAs (miRNAs), involved in essential pathways that confer the malignant cells their tumorigenic potential. Each miRNA can regulate hundreds of messenger RNAs (mRNAs), while various miRNAs can control the same mRNA. Additionally, many miRNAs regulate and are regulated by other species of non-coding RNAs, such as circular RNAs (circRNAs) and long non-coding RNAs (lncRNAs). For this reason, it is extremely difficult to predict, study, and analyze the precise role of a single miRNA involved in human cancer, considering the complexity of its connections. Focusing on a single miRNA molecule represents a limited approach. Additional information could come from network analysis, which has become a common tool in the biological field to better understand molecular interactions. In this review, we focus on the main types of networks (monopartite, association networks and bipartite) used for analyzing biological data related to miRNA function. We briefly present the important steps to take when generating networks, illustrating the theory with published examples and with future perspectives of how this approach can help to better select miRNAs that can be therapeutically targeted in cancer.

摘要

人类癌症的特征是多种 microRNAs(miRNAs)的表达失调,这些 miRNAs 参与了赋予恶性细胞肿瘤发生潜能的基本途径。每个 miRNA 可以调控数百个信使 RNA(mRNA),而各种 miRNA 可以控制同一 mRNA。此外,许多 miRNA 调节和被其他非编码 RNA 调控,如环状 RNA(circRNA)和长非编码 RNA(lncRNA)。因此,考虑到其连接的复杂性,预测、研究和分析参与人类癌症的单个 miRNA 的精确作用极其困难。关注单个 miRNA 分子代表了一种有限的方法。来自网络分析的额外信息可能会有所帮助,网络分析已成为生物学领域中常用的工具,以更好地理解分子相互作用。在这篇综述中,我们重点介绍了用于分析与 miRNA 功能相关的生物数据的主要类型的网络(单分网络、关联网络和二分网络)。我们简要介绍了生成网络时需要采取的重要步骤,并用已发表的例子来说明理论,并展望了这种方法如何有助于更好地选择可在癌症中作为治疗靶点的 miRNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b80/6073868/4d5fe06f3074/ijms-19-01871-g001.jpg

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