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翻译后缓冲导致灵长类动物之间的蛋白质表达水平趋同。

Post-translational buffering leads to convergent protein expression levels between primates.

机构信息

Center for Human Genetics, The Brown foundation Institute of Molecular Medicine, The University of Texas Health Science Center at Houston, Houston, TX, USA.

Department of Human Genetics, University of Chicago, Chicago, IL, USA.

出版信息

Genome Biol. 2018 Jun 27;19(1):83. doi: 10.1186/s13059-018-1451-z.

Abstract

BACKGROUND

Differences in gene regulation between human and closely related species influence phenotypes that are distinctly human. While gene regulation is a multi-step process, the majority of research concerning divergence in gene regulation among primates has focused on transcription.

RESULTS

To gain a comprehensive view of gene regulation, we surveyed genome-wide ribosome occupancy, which reflects levels of protein translation, in lymphoblastoid cell lines derived from human, chimpanzee, and rhesus macaque. We further integrated messenger RNA and protein level measurements collected from matching cell lines. We find that, in addition to transcriptional regulation, the major factor determining protein level divergence between human and closely related species is post-translational buffering. Inter-species divergence in transcription is generally propagated to the level of protein translation. In contrast, gene expression divergence is often attenuated post-translationally, potentially mediated through post-translational modifications.

CONCLUSIONS

Results from our analysis indicate that post-translational buffering is a conserved mechanism that led to relaxation of selective constraint on transcript levels in humans.

摘要

背景

人类与其近亲物种之间基因调控的差异会影响到人类特有的表型。尽管基因调控是一个多步骤的过程,但大多数关于灵长类动物基因调控差异的研究都集中在转录上。

结果

为了全面了解基因调控,我们调查了来自人类、黑猩猩和恒河猴的淋巴母细胞系的全基因组核糖体占有率,核糖体占有率反映了蛋白质翻译的水平。我们进一步整合了来自匹配细胞系的信使 RNA 和蛋白质水平测量值。我们发现,除了转录调控外,决定人类与其近亲物种之间蛋白质水平差异的主要因素是翻译后缓冲。种间转录差异通常会传播到蛋白质翻译水平。相比之下,基因表达的差异在翻译后往往会减弱,这可能是通过翻译后修饰介导的。

结论

我们的分析结果表明,翻译后缓冲是一种保守的机制,导致人类转录水平的选择约束放松。

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