南方根结线虫A2-O基因型的高质量基因组序列
High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.
作者信息
Sato Kazuki, Kadota Yasuhiro, Gan Pamela, Bino Takahiro, Uehara Taketo, Yamaguchi Katsushi, Ichihashi Yasunori, Maki Noriko, Iwahori Hideaki, Suzuki Takamasa, Shigenobu Shuji, Shirasu Ken
机构信息
RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan.
NIBB Core Research Facilities, National Institute for Basic Biology, Okazaki, Aichi, Japan.
出版信息
Genome Announc. 2018 Jun 28;6(26):e00519-18. doi: 10.1128/genomeA.00519-18.
Abstract
Root-knot nematodes ( spp.) cause serious damage to many crops globally. We report the high-quality genome sequence of genotype A2-O. The genome assembly of A2-O is composed of 2,224 contigs with an contig length of 204,551 bp and a total assembly length of 284.05 Mb.
摘要
根结线虫（Meloidogyne spp.）在全球范围内对许多作物造成严重损害。我们报告了基因型A2-O的高质量基因组序列。A2-O的基因组组装由2224个重叠群组成，重叠群长度为204551bp，总组装长度为284.05Mb。
相似文献
1
High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.
Genome Announc. 2018 Jun 28;6(26):e00519-18. doi: 10.1128/genomeA.00519-18.
2
Genome sequence of the root-knot nematode .
J Nematol. 2020;52:1-5. doi: 10.21307/jofnem-2020-025.
3
Genome sequence of the coffee root-knot nematode .
J Nematol. 2021 Jul 19;53. doi: 10.21307/jofnem-2021-065. eCollection 2021.
4
First report of on Ginger and Turmeric in the United States.
J Nematol. 2019;51:1-3. doi: 10.21307/jofnem-2019-006.
5
First Report of Root-Knot Nematode Meloidogyne arenaria Infesting Roots of Anubias barteri in Guangdong, China.
Plant Dis. 2012 May;96(5):773. doi: 10.1094/PDIS-01-12-0034-PDN.
6
First Report of the Root-Knot Nematode Meloidogyne arenaria Race 2 from Several Vegetable Crops in Jordan.
Plant Dis. 2005 Feb;89(2):206. doi: 10.1094/PD-89-0206B.
7
Mitochondrial genome plasticity among species of the nematode genus Meloidogyne (Nematoda: Tylenchina).
Gene. 2015 Apr 15;560(2):173-83. doi: 10.1016/j.gene.2015.01.065. Epub 2015 Feb 2.
8
The Incidence of Root-Knot Nematodes Meloidogyne arenaria, M. incognita, and M. javanica on Vegetables and Weeds in Montenegro.
Plant Dis. 2007 Nov;91(11):1514. doi: 10.1094/PDIS-91-11-1514B.
9
Differences in parasitism of root-knot nematodes ( spp.) on oilseed radish and oat.
J Nematol. 2020;52:1-10. doi: 10.21307/jofnem-2020-043.
10
First Report of Meloidogyne arenaria Parasitizing Lettuce in Southern Spain.
Plant Dis. 2006 Jul;90(7):975. doi: 10.1094/PD-90-0975A.
引用本文的文献
1
Draft genome of pin nematode Paratylenchus projectus recovered from rhizosphere of blueberry.
Parasit Vectors. 2025 Feb 26;18(1):77. doi: 10.1186/s13071-025-06680-8.
2
Insights from draft genomes of Heterodera species isolated from field soil samples.
BMC Genomics. 2025 Feb 18;26(1):158. doi: 10.1186/s12864-025-11351-0.
3
Global analysis of neuropeptide receptor conservation across phylum Nematoda.
BMC Biol. 2024 Oct 8;22(1):223. doi: 10.1186/s12915-024-02017-6.
4
Phased chromosome-scale genome assembly of an asexual, allopolyploid root-knot nematode reveals complex subgenomic structure.
PLoS One. 2024 Jun 6;19(6):e0302506. doi: 10.1371/journal.pone.0302506. eCollection 2024.
5
The Plant Parasitic Nematodes Database: A Comprehensive Genomic Data Platform for Plant Parasitic Nematode Research.
Int J Mol Sci. 2023 Nov 28;24(23):16841. doi: 10.3390/ijms242316841.
6
Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, .
J Nematol. 2023 Nov 15;55(1):20230031. doi: 10.2478/jofnem-2023-0031. eCollection 2023 Feb.
7
First Draft Genome Assembly of Root-Lesion Nematode Generated Using Long-Read Sequencing.
Int J Mol Sci. 2023 Apr 15;24(8):7311. doi: 10.3390/ijms24087311.
8
Satellitome analyses in nematodes illuminate complex species history and show conserved features in satellite DNAs.
BMC Biol. 2022 Nov 18;20(1):259. doi: 10.1186/s12915-022-01460-7.
9
Understanding Molecular Plant-Nematode Interactions to Develop Alternative Approaches for Nematode Control.
Plants (Basel). 2022 Aug 17;11(16):2141. doi: 10.3390/plants11162141.
10
How do emerging long-read sequencing technologies function in transforming the plant pathology research landscape?
Plant Mol Biol. 2022 Dec;110(6):469-484. doi: 10.1007/s11103-022-01305-5. Epub 2022 Aug 13.
本文引用的文献
1
Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change.
Genome Biol Evol. 2017 Oct 1;9(10):2844-2861. doi: 10.1093/gbe/evx201.
2
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.
PLoS Genet. 2017 Jun 8;13(6):e1006777. doi: 10.1371/journal.pgen.1006777. eCollection 2017 Jun.
3
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
4
The two-speed genomes of filamentous pathogens: waltz with plants.
Curr Opin Genet Dev. 2015 Dec;35:57-65. doi: 10.1016/j.gde.2015.09.001. Epub 2015 Nov 3.
5
Parasitic success without sex – the nematode experience.
J Evol Biol. 2014 Jul;27(7):1323-33. doi: 10.1111/jeb.12337.
6
The complex hybrid origins of the root knot nematodes revealed through comparative genomics.
PeerJ. 2014 May 6;2:e356. doi: 10.7717/peerj.356. eCollection 2014.
7
Top 10 plant-parasitic nematodes in molecular plant pathology.
Mol Plant Pathol. 2013 Dec;14(9):946-61. doi: 10.1111/mpp.12057. Epub 2013 Jul 1.
8
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
9
Assessing the gene space in draft genomes.
Nucleic Acids Res. 2009 Jan;37(1):289-97. doi: 10.1093/nar/gkn916. Epub 2008 Nov 28.
10
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.
Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14802-7. doi: 10.1073/pnas.0805946105. Epub 2008 Sep 22.
Zotero 插件