咖啡根结线虫的基因组序列
Genome sequence of the coffee root-knot nematode .
作者信息
Thi Phan Ngan, Besnard Guillaume, Ouazahrou Rania, Sánchez William Solano, Gil Lisa, Manzi Sophie, Bellafiore Stéphane
机构信息
PHIM Plant Health Institute, University of Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France.
CNRS-UPS-IRD, UMR5174, EDB, 118 route de Narbonne, Université Paul Sabatier, 31062 Toulouse, France.
出版信息
J Nematol. 2021 Jul 19;53. doi: 10.21307/jofnem-2021-065. eCollection 2021.
Root-knot nematodes ( spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constructed consisting of 206 contigs, with an N50 length of 1.89 Mb and a total assembly length of 42.1 Mb.
根结线虫（ spp.）对大多数作物造成严重损害。在此，我们报告了咖啡的主要病原体——（哥斯达黎加梅克斯1种群）的高质量基因组序列。其线粒体基因组（20,974 bp）首次得到组装和注释。随后构建了由206个重叠群组成的核基因组，N50长度为1.89 Mb，总组装长度为42.1 Mb。
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