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医学影像存储库中内容发现的自动解剖标注架构。

Automated Anatomic Labeling Architecture for Content Discovery in Medical Imaging Repositories.

机构信息

Instituto de Engenharia Electrónica e Informática de Aveiro, DETI / IEETA - University of Aveiro, Campus Universitário de Santiago, 3810-193, Aveiro, Portugal.

出版信息

J Med Syst. 2018 Jun 29;42(8):145. doi: 10.1007/s10916-018-1004-8.

DOI:10.1007/s10916-018-1004-8
PMID:29959536
Abstract

The combination of textual data with visual features is known to enhance medical image search capabilities. However, the most advanced imaging archives today only index the studies' available meta-data, often containing limited amounts of clinically useful information. This work proposes an anatomic labeling architecture, integrated with an open source archive software, for improved multimodal content discovery in real-world medical imaging repositories. The proposed solution includes a technical specification for classifiers in an extensible medical imaging archive, a classification database for querying over the extracted information, and a set of proof-of-concept convolutional neural network classifiers for identifying the presence of organs in computed tomography scans. The system automatically extracts the anatomic region features, which are saved in the proposed database for later consumption by multimodal querying mechanisms. The classifiers were evaluated with cross-validation, yielding a best F1-score of 96% and an average accuracy of 97%. We expect these capabilities to become common-place in production environments in the future, as automated detection solutions improve in terms of accuracy, computational performance, and interoperability.

摘要

文本数据与视觉特征的结合被认为可以增强医学图像搜索能力。然而,当今最先进的成像档案仅对研究可用的元数据进行索引,这些元数据通常包含有限数量的临床有用信息。这项工作提出了一种解剖标记架构,与开源档案软件集成,用于改进真实世界医学成像存储库中的多模态内容发现。所提出的解决方案包括可扩展医学成像档案中的分类器技术规范、用于查询提取信息的分类数据库以及一组用于识别计算机断层扫描中器官存在的概念验证卷积神经网络分类器。该系统自动提取解剖区域特征,并将其保存在所提出的数据库中,以便以后通过多模态查询机制使用。使用交叉验证对分类器进行了评估,最佳 F1 得分为 96%,平均准确率为 97%。我们预计,随着自动化检测解决方案在准确性、计算性能和互操作性方面的不断提高,这些功能将在未来成为生产环境中的常见功能。

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Med Image Anal. 2017 Dec;42:60-88. doi: 10.1016/j.media.2017.07.005. Epub 2017 Jul 26.
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A two-step convolutional neural network based computer-aided detection scheme for automatically segmenting adipose tissue volume depicting on CT images.一种基于两步卷积神经网络的计算机辅助检测方案,用于自动分割CT图像上显示的脂肪组织体积。
Comput Methods Programs Biomed. 2017 Jun;144:97-104. doi: 10.1016/j.cmpb.2017.03.017. Epub 2017 Mar 21.
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Interactive radiographic image retrieval system.
交互式放射影像检索系统。
Comput Methods Programs Biomed. 2017 Feb;139:209-220. doi: 10.1016/j.cmpb.2016.10.023. Epub 2016 Dec 14.
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An Ensemble of Fine-Tuned Convolutional Neural Networks for Medical Image Classification.用于医学图像分类的微调卷积神经网络集成
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J Med Imaging (Bellingham). 2015 Apr;2(2):025501. doi: 10.1117/1.JMI.2.2.025501. Epub 2015 Apr 3.
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