马铃薯疮痂病病原菌地下葡萄孢菌基因组草图资源
Draft Genome Resource for the Potato Powdery Scab Pathogen Spongospora subterranea.
机构信息
1 University of Innsbruck, Institute of Microbiology, Technikerstraße 25, 6020 Innsbruck, Austria; and.
2 Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.
出版信息
Mol Plant Microbe Interact. 2018 Dec;31(12):1227-1229. doi: 10.1094/MPMI-06-18-0163-A. Epub 2018 Oct 15.
Abstract
The Plasmodiophorida (Phytomyxea, Rhizaria) are a group of protists that infect plants. Of this group, Spongospora subterranea causes major problems for the potato industry by causing powdery scab and root galling of potatoes and as vector for the Potato mop-top virus (PMTV) (genus Pomovirus, family Virgaviridae). A single tuber isolate (SSUBK13) of this uncultivable protist was used to generate DNA for Illumina sequencing. The data were assembled to a draft genome of 28.08 Mb consisting of 2,340 contigs and an L50 of 280. A total of 10,778 genes were predicted and 93% of the BUSCO genes were detected. The presented genome assembly is only the second genome of a plasmodiophorid. The data will accelerate functional genomics to study poorly understood interaction of plasmodiophorids and their hosts.
摘要
类黏菌体（原生动物，根肿菌类）是一组感染植物的原生生物。在这一组中，由地下类黏菌引起的粉状痂和马铃薯根瘤是马铃薯产业的主要问题，并且它还是马铃薯丛矮病毒（PMTV）（属马铃薯卷叶病毒属，呼肠孤病毒科）的载体。该不可培养原生生物的单个块茎分离株（SSUBK13）被用于生成 Illumina 测序的 DNA。数据组装成一个 28.08Mb 的草图基因组，由 2340 个连续序列组成，L50 为 280。共预测到 10778 个基因，检测到 93%的 BUSCO 基因。呈现的基因组组装只是第二个黏菌体基因组。该数据将加速功能基因组学研究，以研究黏菌体及其宿主之间尚未充分了解的相互作用。
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