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本文引用的文献

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Small-Molecule-Binding Riboswitches.小分子结合型核糖开关。
Microbiol Spectr. 2018 Aug;6(4). doi: 10.1128/microbiolspec.RWR-0025-2018.
2
Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions.通过对基因间区域特定子集的比较分析检测224个候选结构化RNA。
Nucleic Acids Res. 2017 Oct 13;45(18):10811-10823. doi: 10.1093/nar/gkx699.
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Integration of Bacterial Small RNAs in Regulatory Networks.细菌小分子 RNA 的调控网络整合。
Annu Rev Biophys. 2017 May 22;46:131-148. doi: 10.1146/annurev-biophys-070816-034058.
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Riboswitch diversity and distribution.核糖开关的多样性与分布
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Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity.核糖开关结构的生物信息学分析揭示了具有改变的配体特异性的变体类别。
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Grad-seq guides the discovery of ProQ as a major small RNA-binding protein.梯度离心测序引导发现ProQ作为一种主要的小RNA结合蛋白。
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Chemistry and Biology of Self-Cleaving Ribozymes.自我切割核酶的化学与生物学
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Insight into lncRNA biology using hybridization capture analyses.利用杂交捕获分析深入了解长链非编码RNA生物学
Biochim Biophys Acta. 2016 Jan;1859(1):121-7. doi: 10.1016/j.bbagrm.2015.09.004. Epub 2015 Sep 14.
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The IS200/IS605 Family and "Peel and Paste" Single-strand Transposition Mechanism.IS200/IS605 家族和“剥贴”单链转位机制。
Microbiol Spectr. 2015 Aug;3(4). doi: 10.1128/microbiolspec.MDNA3-0039-2014.
10
New classes of self-cleaving ribozymes revealed by comparative genomics analysis.通过比较基因组学分析揭示的新型自我切割核酶
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细菌中的长非编码 RNA。

Large Noncoding RNAs in Bacteria.

机构信息

Howard Hughes Medical Institute.

Department of Molecular, Cellular and Developmental Biology.

出版信息

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.RWR-0005-2017.

DOI:10.1128/microbiolspec.RWR-0005-2017
PMID:29992899
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6042979/
Abstract

Bacterial noncoding RNA (ncRNA) classes longer than 200 nucleotides are rare but are responsible for performing some of the most fundamental tasks in living cells. RNAs such as 16S and 23S rRNA, group I and group II introns, RNase P ribozymes, transfer-messenger RNAs, and coenzyme B riboswitches are diverse in structure and accomplish biochemical functions that rival the activities of proteins. Over the last decade, a number of new classes of large ncRNAs have been uncovered in bacteria. A total of 21 classes with no established functions have been identified through the use of bioinformatics search strategies. Based on precedents for bacterial large ncRNAs performing sophisticated functions, it seems likely that some of these structured ncRNAs also will prove to carry out complex functions. Thus, determining their roles will provide a better understanding of fundamental biological processes. A few studies have produced data that provide clues to the purposes of some of these recently found classes, but the true functions of most classes remain mysterious.

摘要

细菌非编码 RNA(ncRNA)大于 200 个核苷酸的种类很少,但它们负责执行活细胞中一些最基本的任务。16S 和 23S rRNA、I 类和 II 类内含子、RNase P 核酶、转移信使 RNA 和辅酶 B 核糖开关等 RNA 在结构上多种多样,并且完成的生化功能可与蛋白质的活性相媲美。在过去的十年中,已经在细菌中发现了许多新的长 ncRNA 种类。通过使用生物信息学搜索策略,总共鉴定出了 21 种尚未确定功能的 ncRNA 种类。鉴于细菌中大型 ncRNA 执行复杂功能的先例,这些具有特定结构的 ncRNA 中很可能有一些也将被证明具有复杂的功能。因此,确定它们的功能将有助于更好地了解基本的生物学过程。一些研究已经提供了一些数据,这些数据为这些最近发现的 ncRNA 种类的部分功能提供了线索,但大多数 ncRNA 种类的真正功能仍然是个谜。