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基于生成对抗网络的病理图像细胞级视觉表示的无监督学习。

Unsupervised Learning for Cell-Level Visual Representation in Histopathology Images With Generative Adversarial Networks.

出版信息

IEEE J Biomed Health Inform. 2019 May;23(3):1316-1328. doi: 10.1109/JBHI.2018.2852639. Epub 2018 Jul 3.

Abstract

The visual attributes of cells, such as the nuclear morphology and chromatin openness, are critical for histopathology image analysis. By learning cell-level visual representation, we can obtain a rich mix of features that are highly reusable for various tasks, such as cell-level classification, nuclei segmentation, and cell counting. In this paper, we propose a unified generative adversarial networks architecture with a new formulation of loss to perform robust cell-level visual representation learning in an unsupervised setting. Our model is not only label-free and easily trained but also capable of cell-level unsupervised classification with interpretable visualization, which achieves promising results in the unsupervised classification of bone marrow cellular components. Based on the proposed cell-level visual representation learning, we further develop a pipeline that exploits the varieties of cellular elements to perform histopathology image classification, the advantages of which are demonstrated on bone marrow datasets.

摘要

细胞的视觉属性,如核形态和染色质开放性,对组织病理学图像分析至关重要。通过学习细胞级别的视觉表示,我们可以获得丰富的特征组合,这些特征对于各种任务非常可重复使用,例如细胞级分类、核分割和细胞计数。在本文中,我们提出了一种统一的生成对抗网络架构,并采用新的损失函数,在无监督的情况下进行稳健的细胞级视觉表示学习。我们的模型不仅是无标签的,易于训练,而且能够进行细胞级别的无监督分类,具有可解释的可视化,在骨髓细胞成分的无监督分类中取得了有希望的结果。基于所提出的细胞级视觉表示学习,我们进一步开发了一个利用细胞元素多样性进行组织病理学图像分类的流水线,该流水线在骨髓数据集上的优势得到了证明。

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