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法医昆虫学中的DNA条形码——建立潜在法医相关节肢动物物种的DNA参考文库。

DNA Barcoding in Forensic Entomology - Establishing a DNA Reference Library of Potentially Forensic Relevant Arthropod Species.

作者信息

Chimeno Caroline, Morinière Jérôme, Podhorna Jana, Hardulak Laura, Hausmann Axel, Reckel Frank, Grunwald Jan E, Penning Randolph, Haszprunar Gerhard

机构信息

Zoologische Staatssammlung München (SNSB-ZSM), Münchhausenstrasse 21, 81247, München, Germany.

Mendel University in Brno (MEDELU), Zemedelska 1, Brno, 613 00, Czech Republic.

出版信息

J Forensic Sci. 2019 Mar;64(2):593-601. doi: 10.1111/1556-4029.13869. Epub 2018 Jul 11.

Abstract

Throughout the years, DNA barcoding has gained in importance in forensic entomology as it leads to fast and reliable species determination. High-quality results, however, can only be achieved with a comprehensive DNA barcode reference database at hand. In collaboration with the Bavarian State Criminal Police Office, we have initiated at the Bavarian State Collection of Zoology the establishment of a reference library containing arthropods of potential forensic relevance to be used for DNA barcoding applications. CO1-5P' DNA barcode sequences of hundreds of arthropods were obtained via DNA extraction, PCR and Sanger Sequencing, leading to the establishment of a database containing 502 high-quality sequences which provide coverage for 88 arthropod species. Furthermore, we demonstrate an application example of this library using it as a backbone to a high throughput sequencing analysis of arthropod bulk samples collected from human corpses, which enabled the identification of 31 different arthropod Barcode Index Numbers.

摘要

多年来,DNA条形码技术在法医昆虫学中的重要性日益凸显,因为它能实现快速且可靠的物种鉴定。然而,只有手头有一个全面的DNA条形码参考数据库,才能获得高质量的结果。我们与巴伐利亚州刑事警察局合作,在巴伐利亚州动物学收藏馆启动了一个参考文库的建设,该文库包含具有潜在法医相关性的节肢动物,用于DNA条形码应用。通过DNA提取、聚合酶链式反应(PCR)和桑格测序获得了数百种节肢动物的细胞色素氧化酶亚基I(CO1)-5P' DNA条形码序列,从而建立了一个包含502条高质量序列的数据库,这些序列涵盖了88种节肢动物。此外,我们展示了这个文库的一个应用实例,即将其作为从人类尸体采集的节肢动物大量样本高通量测序分析的主干,这使得能够识别31个不同的节肢动物条形码索引号。

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