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RNA 伴侣蛋白 Hfq 富含甘氨酸的不寻常 C 末端在细菌生理学中发挥重要作用。

The unusual glycine-rich C terminus of the RNA chaperone Hfq plays an important role in bacterial physiology.

机构信息

From the Department of Biotechnology, Indian Institute of Technology Roorkee, Roorkee 247667, India and.

the Division of Physiology and Climatology, ICAR-Indian Veterinary Research Institute, Izatnagar-Bareilly (UP) 243122, India.

出版信息

J Biol Chem. 2018 Aug 31;293(35):13377-13388. doi: 10.1074/jbc.RA118.002921. Epub 2018 Jul 12.

Abstract

is a Gram-negative nosocomial pathogen that causes soft tissue infections in patients who spend a long time in intensive care units. This recalcitrant bacterium is very well known for developing rapid drug resistance, which is a combined outcome of its natural competence and mobile genetic elements. Successful efforts to treat these infections would be aided by additional information on the physiology of Toward that end, we recently reported on a small RNA (sRNA), AbsR25, in this bacterium that regulates the genes of several efflux pumps. Because sRNAs often require the RNA chaperone Hfq for assistance in binding to their cognate mRNA targets, we identified and characterized this protein in The homolog in is a large protein with an extended C terminus unlike Hfqs in other Gram-negative pathogens. The extension has a compositional bias toward glycine and, to a lower extent, phenylalanine and glutamine, suggestive of an intrinsically disordered region. We studied the importance of this glycine-rich tail using truncated versions of Hfq in biophysical assays and complementation of an deletion mutant, finding that the tail was necessary for high-affinity RNA binding. Further tests implicate Hfq in important cellular processes of like metabolism, drug resistance, stress tolerance, and virulence. Our findings underline the importance of the glycine-rich C terminus in RNA binding, ribo-regulation, and auto-regulation of Hfq, demonstrating this hitherto overlooked protein motif to be an indispensable part of the Hfq.

摘要

是一种革兰氏阴性的医院病原体,会导致在重症监护病房中长时间住院的患者发生软组织感染。这种难以治疗的细菌以快速产生药物抗性而闻名,这是其天然能力和可移动遗传因子共同作用的结果。如果能获得更多关于该细菌生理学方面的信息,将有助于成功治疗这些感染。为此,我们最近报道了该细菌中的一种小 RNA(sRNA)AbsR25,它可以调节几种外排泵的基因。由于 sRNA 通常需要 RNA 伴侣 Hfq 的协助才能与其同源 mRNA 靶标结合,因此我们在 中鉴定并表征了该蛋白。 与其他革兰氏阴性病原体中的 Hfq 不同, 中的同源蛋白是一种带有延伸 C 末端的大型蛋白质。该延伸区域具有甘氨酸组成的偏向性,在较低程度上还具有苯丙氨酸和谷氨酰胺组成的偏向性,表明其具有无规卷曲结构区域。我们使用 Hfq 的截断版本在生物物理测定和 缺失突变体的互补中研究了该富含甘氨酸尾巴的重要性,发现该尾巴对于高亲和力 RNA 结合是必需的。进一步的测试表明 Hfq 参与了 的重要细胞过程,如代谢、药物抗性、应激耐受和毒力。我们的发现强调了富含甘氨酸的 C 末端在 RNA 结合、核糖调控和 Hfq 自身调控中的重要性,表明这个迄今为止被忽视的蛋白基序是 Hfq 不可或缺的一部分。

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