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真兽亚纲脂联素基因的比较基因组分析

Comparative genomic analysis of eutherian adiponectin genes.

作者信息

Premzl Marko

机构信息

The Australian National University Alumni, 4 Kninski trg Sq., Zagreb, Croatia.

出版信息

Heliyon. 2018 Jun 6;4(6):e00647. doi: 10.1016/j.heliyon.2018.e00647. eCollection 2018 Jun.

Abstract

The present study proposed updated and standardized classification and nomenclature of eutherian adiponectin genes implicated in regulation of systemic metabolism and inflammation and activation of classical complement pathway. The revisions of comprehensive adiponectin gene data sets used eutherian comparative genomic analysis protocol and public reference genomic sequence assemblies. Among 438 potential coding sequences, the tests of reliability of eutherian public genomic sequences annotated most comprehensive curated third-party data gene data set of eutherian adiponectin genes that included 211 complete coding sequences. There were 18 major gene clusters of eutherian adiponectin genes described, one of which included evidence of differential gene expansions. For example, the present analysis initially described human and genes. Finally, the tests of protein molecular evolution using relative synonymous codon usage statistics confirmed protein primary structure similarities between eutherian adiponectins and tumor necrosis factor ligands.

摘要

本研究提出了更新且标准化的真兽亚纲脂联素基因分类和命名法,这些基因与全身代谢调节、炎症以及经典补体途径的激活有关。对综合脂联素基因数据集的修订采用了真兽亚纲比较基因组分析方案和公共参考基因组序列组装。在438个潜在编码序列中,对真兽亚纲公共基因组序列可靠性的测试标注了真兽亚纲脂联素基因最全面的经策划的第三方数据基因数据集,其中包括211个完整编码序列。描述了真兽亚纲脂联素基因的18个主要基因簇,其中一个包括基因差异扩增的证据。例如,本分析最初描述了人类[具体基因]和[具体基因]。最后,使用相对同义密码子使用统计进行的蛋白质分子进化测试证实了真兽亚纲脂联素与肿瘤坏死因子配体之间的蛋白质一级结构相似性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b90/6040601/07ca0c8653f5/gr1.jpg

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