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本文引用的文献

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Targeting Unoccupied Surfaces on Protein-Protein Interfaces.靶向蛋白质-蛋白质界面的未占据表面。
J Am Chem Soc. 2017 Nov 8;139(44):15560-15563. doi: 10.1021/jacs.7b05960. Epub 2017 Aug 4.
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An engineered protein antagonist of K-Ras/B-Raf interaction.一种 K-Ras/B-Raf 相互作用的工程化蛋白拮抗剂。
Sci Rep. 2017 Jul 19;7(1):5831. doi: 10.1038/s41598-017-05889-7.
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Diversity-Oriented Stapling Yields Intrinsically Cell-Penetrant Inducers of Autophagy.面向多样性的订书机产生内在穿透细胞的自噬诱导剂。
J Am Chem Soc. 2017 Jun 14;139(23):7792-7802. doi: 10.1021/jacs.7b01698. Epub 2017 May 9.
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The archaeal "7 kDa DNA-binding" proteins: extended characterization of an old gifted family.古菌“7 kDa DNA 结合”蛋白:古老天赋家族的深入特征分析。
Sci Rep. 2016 Nov 17;6:37274. doi: 10.1038/srep37274.
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Inhibition of RAS function through targeting an allosteric regulatory site.通过靶向变构调节位点抑制RAS功能。
Nat Chem Biol. 2017 Jan;13(1):62-68. doi: 10.1038/nchembio.2231. Epub 2016 Nov 7.
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Analysis of Loops that Mediate Protein-Protein Interactions and Translation into Submicromolar Inhibitors.分析介导蛋白质-蛋白质相互作用的环,并将其转化为亚毫摩尔抑制剂。
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Constraining an Irregular Peptide Secondary Structure through Ring-Closing Alkyne Metathesis.通过闭环炔烃复分解反应约束不规则肽二级结构
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Strong Enrichment of Aromatic Residues in Binding Sites from a Charge-neutralized Hyperthermostable Sso7d Scaffold Library.来自电荷中和的超嗜热Sso7d支架文库的结合位点中芳香族残基的强烈富集。
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An optimal hydrogen-bond surrogate for α-helices.α螺旋的最佳氢键替代物。
Chem Commun (Camb). 2016 Apr 28;52(33):5738-41. doi: 10.1039/c6cc01104g.
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An Effective Strategy for Stabilizing Minimal Coiled Coil Mimetics.一种稳定最小卷曲螺旋模拟物的有效策略。
J Am Chem Soc. 2015 Sep 16;137(36):11618-21. doi: 10.1021/jacs.5b05525. Epub 2015 Sep 4.

氢键替代物稳定 β-发夹。

Hydrogen Bond Surrogate Stabilization of β-Hairpins.

机构信息

Department of Chemistry , New York University , 100 Washington Square East , New York , New York 10003 , United States.

出版信息

ACS Chem Biol. 2018 Aug 17;13(8):2027-2032. doi: 10.1021/acschembio.8b00641. Epub 2018 Jul 18.

DOI:10.1021/acschembio.8b00641
PMID:30005156
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7187762/
Abstract

Peptide secondary and tertiary structure motifs frequently serve as inspiration for the development of protein-protein interaction (PPI) inhibitors. While a wide variety of strategies have been used to stabilize or imitate α-helices, similar strategies for β-sheet stabilization are more limited. Synthetic scaffolds that stabilize reverse turns and cross-strand interactions have provided important insights into β-sheet stability and folding. However, these templates occupy regions of the β-sheet that might impact the β-sheet's ability to bind at a PPI interface. Here, we present the hydrogen bond surrogate (HBS) approach for stabilization of β-hairpin peptides. The HBS linkage replaces a cross-strand hydrogen bond with a covalent linkage, conferring significant conformational and proteolytic resistance. Importantly, this approach introduces the stabilizing linkage in the buried β-sheet interior, retains all side chains for further functionalization, and allows efficient solid-phase macrocyclization. We anticipate that HBS stabilization of PPI β-sheets will enhance the development of β-sheet PPI inhibitors and expand the repertoire of druggable PPIs.

摘要

肽的二级和三级结构模体经常为蛋白质-蛋白质相互作用(PPI)抑制剂的开发提供灵感。虽然已经使用了多种策略来稳定或模拟α-螺旋,但用于β-折叠稳定的类似策略则更为有限。稳定反向转弯和跨链相互作用的合成支架为β-折叠的稳定性和折叠提供了重要的见解。然而,这些模板占据了β-折叠的区域,可能会影响β-折叠在 PPI 界面上的结合能力。在这里,我们提出了氢键替代物(HBS)方法来稳定β-发夹肽。HBS 键取代了跨链氢键的共价键,赋予了显著的构象和蛋白水解抗性。重要的是,这种方法在埋藏的β-折叠内部引入了稳定的键,保留了所有的侧链以进一步进行功能化,并允许有效的固相大环化。我们预计,HBS 对 PPI β-折叠的稳定将增强β-折叠 PPI 抑制剂的开发,并扩展可成药的 PPI 范围。