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几种沙特阿拉伯骆驼品种中与牛奶相关的一些基因和蛋白质的变异性。

Variability of Some Milk-Associated Genes and Proteins in Several Breeds of Saudi Arabian Camels.

机构信息

Biology Department, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah, 21589, Saudi Arabia.

Therapeutic and Protective Proteins Laboratory, Protein Research Department, Genetic Engineering and Biotechnology Research Institute, City for Scientific Research and Technology Applications, New Borg EL-Arab, 21934, Alexandria, Egypt.

出版信息

Protein J. 2018 Aug;37(4):333-352. doi: 10.1007/s10930-018-9782-x.

Abstract

To gain knowledge on the molecular basis of diversity of several clans of Saudi camel (Camelus dromedarius) characterization of these animals was conducted at both genetic and protein levels. To this end, blood and milk samples were collected from several camel breeds at different Saudi Arabia locations (northern Jeddah, Riyadh, and Alwagh governorates). Genomic DNA was extracted from blood of four Saudi camel breeds (Majahem, Safra, Wadha, and Hamara), and DNA fragments of the casein and α-lactalbumin genes were amplified. The retrieved DNA sequences were analyzed for genetic variability. The inter-simple sequence repeat technique was used for confirming the relationships among the analyzed camel breeds, and the PCR-RFLP with two restriction enzymes was utilized for exploring their molecular variations. The number of haplotypes, gene diversity, nucleotide diversity, average number of nucleotide differences, and sequence conservation were calculated for all the analyzed DNA sequences. These analyses revealed the presence of several single nucleotide polymorphisms in the analyzed DNA sequences. A group of neighbor joining trees was built for inferring the evolutionary variations among the studied animals. Protein profiling of milk from different camel clans was also conducted, and differences between and within the Saudi camel clans were easily found based on the isoelectric focusing (IEF) profiles using ampholytes with different IEF range. This study revealed that analyzed camel breeds show low levels of genetic differences. This may be a reflection of the evolutionary history of C. dromedarius that was domesticated based on a highly homogeneous ancestor ecotype.

摘要

为了了解沙特骆驼(Camelus dromedarius)几个族群多样性的分子基础,对这些动物进行了遗传和蛋白质水平的特征描述。为此,从沙特阿拉伯不同地区(吉达北部、利雅得和瓦哈省)的多个骆驼品种采集了血液和牛奶样本。从四个沙特骆驼品种(Majahem、Safra、Wadha 和 Hamara)的血液中提取基因组 DNA,并扩增了酪蛋白和α-乳白蛋白基因的 DNA 片段。分析了回收的 DNA 序列以研究遗传变异。使用简单重复序列间 PCR 技术来确认分析的骆驼品种之间的关系,并用两种限制酶的 PCR-RFLP 技术来探索它们的分子变异。计算了所有分析的 DNA 序列的单倍型数量、基因多样性、核苷酸多样性、平均核苷酸差异数和序列保守性。这些分析显示,在分析的 DNA 序列中存在几个单核苷酸多态性。构建了一组邻接树,以推断研究动物之间的进化变异。还对不同骆驼族群的牛奶进行了蛋白质谱分析,根据不同等电聚焦(IEF)范围的两性电解质的 IEF 图谱,很容易发现沙特骆驼族群之间和内部的差异。本研究表明,分析的骆驼品种显示出较低的遗传差异。这可能反映了 C. dromedarius 的进化历史,它是基于高度同质的祖先生态型进行驯化的。

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