Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, United Kingdom.
Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, United Kingdom.
PLoS Comput Biol. 2018 Jul 16;14(7):e1006284. doi: 10.1371/journal.pcbi.1006284. eCollection 2018 Jul.
The Band 3 (AE1, SLC4A1) membrane protein is found in red blood cells and in kidney where it functions as an electro-neutral chloride/bicarbonate exchanger. In this study, we have used molecular dynamics simulations to provide the first realistic model of the dimeric membrane domain of human Band 3 in an asymmetric lipid bilayer containing a full complement of phospholipids, including phosphatidylinositol 4,5-bisphosphate (PIP2) and cholesterol, and its partner membrane protein Glycophorin A (GPA). The simulations show that the annular layer in the inner leaflet surrounding Band 3 was enriched in phosphatidylserine and PIP2 molecules. Cholesterol was also enriched around Band 3 but also at the dimer interface. The interaction of these lipids with specific sites on Band 3 may play a role in the folding and function of this anion transport membrane protein. GPA associates with Band 3 to form the Wright (Wr) blood group antigen, an interaction that involves an ionic bond between Glu658 in Band 3 and Arg61 in GPA. We were able to recreate this complex by performing simulations to allow the dimeric transmembrane portion of GPA to interact with Band 3 in a model membrane. Large-scale simulations showed that the GPA dimer can bridge Band 3 dimers resulting in the dynamic formation of long strands of alternating Band 3 and GPA dimers.
膜蛋白 Band 3(AE1,SLC4A1)存在于红细胞和肾脏中,作为一种电中性氯离子/碳酸氢盐交换体发挥作用。在这项研究中,我们使用分子动力学模拟首次提供了人源 Band 3 二聚体膜结构域在含有完整磷脂成分(包括磷脂酰肌醇 4,5-二磷酸(PIP2)和胆固醇)和其伴侣膜蛋白糖蛋白 A(GPA)的不对称脂质双层中的真实模型。模拟表明,内小叶中围绕 Band 3 的环形层富含磷脂酰丝氨酸和 PIP2 分子。胆固醇也在 Band 3 周围以及二聚体界面处富集。这些脂质与 Band 3 特定部位的相互作用可能在这种阴离子转运膜蛋白的折叠和功能中发挥作用。GPA 与 Band 3 结合形成 Wright(Wr)血型抗原,这种相互作用涉及 Band 3 中的 Glu658 和 GPA 中的 Arg61 之间的离子键。我们通过进行模拟,使 GPA 的二聚体跨膜部分与模型膜中的 Band 3 相互作用,从而能够重现这种复合物。大规模模拟表明,GPA 二聚体可以桥接 Band 3 二聚体,从而导致 Band 3 和 GPA 二聚体的长链动态形成。