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环境胁迫下的转录与翻译关系:RNA 测序和 iTRAQ 蛋白质组学分析——关于有性生殖和孤雌生殖雌性个体的研究

Transcriptional and Translational Relationship in Environmental Stress: RNAseq and ITRAQ Proteomic Analysis Between Sexually Reproducing and Parthenogenetic Females in .

作者信息

Jia Jingyi, Liu Xiangjiang, Li Lu, Lei Chengqiang, Dong Ying, Wu Guoqiang, Hu Guangfu

机构信息

College of Fisheries, Huazhong Agricultural University, Wuhan, China.

出版信息

Front Physiol. 2018 Jul 2;9:812. doi: 10.3389/fphys.2018.00812. eCollection 2018.

Abstract

is a kind of small-bodied water flea within the family Moinidae. Similar to , could also switch its reproduction mode from parthenogenetic female (PF) to sexual female (SF) to adapt to the external environment. To uncover the mechanisms of reproductive switching in , we used both RNA-Seq and iTRAQ analyses to investigate the differentially expressed genes (DEGs) and their protein products between SF and PF in . A total of 1665 DEGs (702 up-regulated, 963 down-regulated) and 600 differentially expressed proteins (DEPs) (102 up-regulated, 498 down-regulated) were detected in SF. Correlation analyses indicated that 31 genes were expressed significantly differentially at both transcriptomic and proteomic levels, including 15 up-regulated genes and 16 down-regulated genes in SF. Meanwhile, our data also showed that 528 DEPs have discordant expression at transcript level, implying post-transcriptional (including translational) regulation. These top up-regulated genes and their protein products in SF were mainly grouped into the globin-related family, vitellogenin-related family, cuticle-related family, Hsp-related family and methyltransferases-related family, which were all involved in the reproductive switching in . In contrast, a cluster of orthologous groups revealed that up-regulated genes and their protein products in PF were strongly associated with the metabolic process, which may be responsible for rapid population proliferation in .

摘要

是裸腹溞科中的一种小型水蚤。与……相似,……也能够将其繁殖模式从孤雌生殖雌性(PF)转变为有性生殖雌性(SF)以适应外部环境。为了揭示……中生殖转换的机制,我们使用RNA测序和iTRAQ分析来研究……中SF和PF之间的差异表达基因(DEG)及其蛋白质产物。在SF中总共检测到1665个DEG(702个上调,963个下调)和600个差异表达蛋白质(DEP)(102个上调,498个下调)。相关性分析表明,31个基因在转录组和蛋白质组水平上均有显著差异表达,其中包括SF中15个上调基因和16个下调基因。同时,我们的数据还表明,528个DEP在转录水平上有不一致的表达,这意味着存在转录后(包括翻译)调控。这些在SF中上调的基因及其蛋白质产物主要分为与珠蛋白相关的家族、卵黄蛋白原相关的家族、角质层相关的家族、热休克蛋白相关的家族和甲基转移酶相关的家族,它们都参与了……中的生殖转换。相比之下,直系同源簇显示,PF中上调的基因及其蛋白质产物与代谢过程密切相关,这可能是……中种群快速增殖的原因。

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