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新属、新种,一种具有超广谱β-内酰胺酶的肠杆菌科成员,从重症监护病房表面分离得到。

gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces.

作者信息

Potter Robert F, D'Souza Alaric W, Wallace Meghan A, Shupe Angela, Patel Sanket, Gul Danish, Kwon Jennie H, Beatty Wandy, Andleeb Saadia, Burnham Carey-Ann D, Dantas Gautam

机构信息

The Edison Family Center for Genome Sciences and Systems Biology, Washington University in St. Louis School of Medicine, St. Louis, MO, United States.

Department of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO, United States.

出版信息

Front Microbiol. 2018 Jul 20;9:1629. doi: 10.3389/fmicb.2018.01629. eCollection 2018.

Abstract

Two Gram-negative bacilli strains, designated BP-1(T) and BP-2, were recovered from two different Intensive Care Unit surfaces during a longitudinal survey in Pakistan. Both strains were unidentified using the bioMerieux VITEK MS IVD v2.3.3 and Bruker BioTyper MALDI-TOF mass spectrometry platforms. To more precisely determine the taxonomic identity of BP-1(T) and BP-2, we employed a biochemical and phylogenomic approach. The 16S rRNA gene sequence of strain BP-1(T) had the highest identity to CDC 2991-81(T) (98.63%) CECT 863(T) (98.56%), NBRC 105722(T) (97.74%) and NBRC 105723(T) (97.74%). The biochemical utilization scheme of BP-1(T) using the Analytic Profile Index for Enterobacteriaceae (API20E) indicated its enzymatic functions are unique within the Enterobacteriaceae but most closely resemble spp., and . Phylogenomic analysis of the shared genes between BP-1(T), BP-2 and type strains from and indicate that BP-1(T) and BP-2 isolates form a distinct branch from these genera. Average Nucleotide Identity analysis indicates that BP-1(T) and BP-2 are the same species. The biochemical and phylogenomic analysis indicate strains BP-1(T) and BP-2 represent a novel species from a new genus within the Enterobacteriaceae family, for which the name gen. nov., sp. nov., is proposed. The type strain is BP-1(T) (= ATCC BAA-2937, = NBRC 113412).

摘要

在巴基斯坦进行的一项纵向调查中,从两个不同的重症监护病房表面分离出两株革兰氏阴性杆菌菌株,分别命名为BP-1(T)和BP-2。使用生物梅里埃VITEK MS IVD v2.3.3和布鲁克BioTyper MALDI-TOF质谱平台均无法鉴定这两株菌株。为了更准确地确定BP-1(T)和BP-2的分类身份,我们采用了生化和系统基因组学方法。菌株BP-1(T)的16S rRNA基因序列与CDC 2991-81(T)(98.63%)、CECT 863(T)(98.56%)、NBRC 105722(T)(97.74%)和NBRC 105723(T)(97.74%)的序列一致性最高。使用肠杆菌科分析谱索引(API20E)对BP-1(T)进行生化利用方案分析表明,其酶功能在肠杆菌科中是独特的,但与 spp.、 和 最为相似。对BP-1(T)、BP-2与来自 和 的模式菌株之间的共享基因进行系统基因组学分析表明,BP-1(T)和BP-2分离株形成了一个与这些属不同的分支。平均核苷酸同一性分析表明BP-1(T)和BP-2是同一物种。生化和系统基因组学分析表明,菌株BP-1(T)和BP-2代表了肠杆菌科一个新属中的一个新物种,为此提出新属名 gen. nov.,新种名 sp. nov.。模式菌株为BP-1(T)(=ATCC BAA-2937,=NBRC 113412)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f30e/6062592/12dd2f747cb5/fmicb-09-01629-g0001.jpg

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