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Chania multitudinisentens 新属,新种,一种从垃圾填埋场土壤中分离出的肠杆菌科中产生N-酰基高丝氨酸内酯的细菌。

Chania multitudinisentens gen. nov., sp. nov., an N-acyl-homoserine-lactone-producing bacterium in the family Enterobacteriaceae isolated from landfill site soil.

作者信息

Ee Robson, Madhaiyan Munusamy, Ji Lianghui, Lim Yan-Lue, Nor Nuruddin Muhammad, Tee Kok-Keng, Chen Jian-Woon, Yin Wai-Fong

机构信息

Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia.

Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604, Singapore.

出版信息

Int J Syst Evol Microbiol. 2016 Jun;66(6):2297-2304. doi: 10.1099/ijsem.0.001025. Epub 2016 Mar 15.

Abstract

Phylogenetic and taxonomic characterization was performed for bacterium RB-25T, which was isolated from a soil sample collected in a former municipal landfill site in Puchong, Malaysia. Growth occurred at 20-37 °C at pH 5-8 but not in the presence of 9 % (w/v) NaCl or higher. The principal fatty acids were C16:0, C18:1ω7c and summed feature 3 (C16:1ω7c and/or iso-C15:0 2-OH). Ubiquinone-8 was the only isoprenoid quinone detected. Polar lipid analysis revealed the presence of phospholipid, phosphoaminolipid, phosphatidylethanolamine, phosphatidylglycerol and one unidentified aminolipid. DNA G+C content was 50.9 mol% phylogenetic analysis based on 16S rRNA gene sequence showed that strain RB-25T formed a distinct lineage within the family Enterobacteriaceae of the class Gammaproteobacteria. It exhibited a low level of 16S rRNA gene sequence similarity with its phylogenetic neighbours Pantoea rwandensis LMG 26275T (96.6 %), Rahnella aquatilis CIP 78.65T (96.5 %), Pectobacterium betavasculorum ATCC 43762T (96.4 %), Pantoea rodasii LMG 26273T (96.3 %), Gibbsiella dentisursi NUM 1720T (96.3 %) and Serratia glossinae C1T (96.2 %). Multilocus sequence analyses based on fusA, pyrG, rplB, rpoB and sucA sequences showed a clear distinction of strain RB-25T from the most closely related genera. Isolate RB-25T could also be distinguished from members of these genera by a combination of the DNA G+C content, respiratory quinone system, fatty acid profile, polar lipid composition and other phenotypic features. Strain RB-25T represents a novel species of a new genus, for which the name Chaniamultitudinisentens gen. nov., sp. nov. is proposed. The type strain is RB-25T (=DSM 28811T=LMG 28304T).

摘要

对从马来西亚蒲种市一个旧市政垃圾填埋场采集的土壤样本中分离出的RB-25T细菌进行了系统发育和分类学特征分析。该菌在20-37 °C、pH值5-8的条件下生长,但在9%(w/v)或更高浓度的NaCl存在时不生长。主要脂肪酸为C16:0、C18:1ω7c和特征性总和3(C16:1ω7c和/或异-C15:0 2-OH)。检测到的唯一类异戊二烯醌为泛醌-8。极性脂质分析表明存在磷脂、磷酸氨基脂质、磷脂酰乙醇胺、磷脂酰甘油和一种未鉴定的氨基脂质。DNA G+C含量为50.9 mol%。基于16S rRNA基因序列的系统发育分析表明,RB-25T菌株在γ-变形菌纲肠杆菌科内形成了一个独特的分支。它与其系统发育邻近平滑泛菌LMG 26275T(96.6%)、水生拉恩菌CIP 78.65T(96.5%)、甜菜果胶杆菌ATCC 43762T(96.4%)、罗达斯泛菌LMG 26273T(96.3%)、龋齿吉氏菌NUM 1720T(96.3%)和舌蝇沙雷氏菌C1T(96.2%)的16S rRNA基因序列相似性较低。基于fusA、pyrG、rplB、rpoB和sucA序列的多位点序列分析表明,RB-25T菌株与最密切相关的属有明显区别。分离株RB-25T也可通过DNA G+C含量、呼吸醌系统、脂肪酸谱、极性脂质组成和其他表型特征与这些属的成员区分开来。RB-25T菌株代表了一个新属的新物种,为此提出新属名Chaniamultitudinisentens gen. nov.,新种名Chaniamultitudinisentens sp. nov.。模式菌株为RB-25T(=DSM 28811T=LMG 28304T)。

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