• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

认识到非编码功能在临床基因组学中的意义。

Realizing the significance of noncoding functionality in clinical genomics.

机构信息

Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.

St. Vincents Clinical School, UNSW Sydney, Sydney, NSW, Australia.

出版信息

Exp Mol Med. 2018 Aug 7;50(8):1-8. doi: 10.1038/s12276-018-0087-0.

DOI:10.1038/s12276-018-0087-0
PMID:30089779
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6082831/
Abstract

Clinical genomics promises unprecedented precision in understanding the genetic basis of disease. Understanding the impact of variation across the genome is required to realize this potential. Currently, clinical genomics analyses focus on protein-coding genes. However, the noncoding genome is substantially larger than the protein-coding counterpart, and contains structural, regulatory, and transcribed information that needs to be incorporated into genome annotations if the full extent of the opportunity to use genomic information in healthcare is to be realized. This article reviews the challenges and opportunities in unlocking the clinical significance of coding and noncoding genomic information and translating its utility in practice.

摘要

临床基因组学有望在理解疾病的遗传基础方面实现前所未有的精准度。要实现这一潜力,就需要了解整个基因组中变异的影响。目前,临床基因组学分析主要集中在蛋白质编码基因上。然而,非编码基因组比蛋白质编码基因大得多,包含结构、调节和转录信息,如果要充分利用基因组信息在医疗保健中的机会,就需要将这些信息纳入基因组注释中。本文综述了在解锁编码和非编码基因组信息的临床意义并将其实际应用中的实用性转化方面所面临的挑战和机遇。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/38a19e0f7ac5/12276_2018_87_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/338469de1caf/12276_2018_87_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/518c5b0ba319/12276_2018_87_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/38a19e0f7ac5/12276_2018_87_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/338469de1caf/12276_2018_87_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/518c5b0ba319/12276_2018_87_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3657/6082831/38a19e0f7ac5/12276_2018_87_Fig3_HTML.jpg

相似文献

1
Realizing the significance of noncoding functionality in clinical genomics.认识到非编码功能在临床基因组学中的意义。
Exp Mol Med. 2018 Aug 7;50(8):1-8. doi: 10.1038/s12276-018-0087-0.
2
Evolutionary conservation in noncoding genomic regions.非编码基因组区域的进化保守性。
Trends Genet. 2021 Oct;37(10):903-918. doi: 10.1016/j.tig.2021.06.007. Epub 2021 Jul 5.
3
Annotating non-coding regions of the genome.注释基因组的非编码区域。
Nat Rev Genet. 2010 Aug;11(8):559-71. doi: 10.1038/nrg2814. Epub 2010 Jul 13.
4
PINES: phenotype-informed tissue weighting improves prediction of pathogenic noncoding variants.PINES:表型信息组织加权可提高致病性非编码变异的预测能力。
Genome Biol. 2018 Oct 25;19(1):173. doi: 10.1186/s13059-018-1546-6.
5
Prioritizing non-coding regions based on human genomic constraint and sequence context with deep learning.基于深度学习的人类基因组约束和序列上下文对非编码区域进行优先级排序。
Nat Commun. 2021 Mar 8;12(1):1504. doi: 10.1038/s41467-021-21790-4.
6
Genomic Locations of Conserved Noncoding Sequences and Their Proximal Protein-Coding Genes in Mammalian Expression Dynamics.哺乳动物表达动态中保守非编码序列及其附近蛋白质编码基因的基因组位置。
Mol Biol Evol. 2016 Jul;33(7):1807-17. doi: 10.1093/molbev/msw058. Epub 2016 Mar 26.
7
Identifying functional annotation for noncoding genomic sequences.
Curr Protoc Hum Genet. 2012 Jan;Chapter 1:Unit1.10. doi: 10.1002/0471142905.hg0110s72.
8
Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs.比较基因组分析强调了假基因化蛋白编码基因对人类 lincRNAs 的贡献。
BMC Genomics. 2017 Oct 16;18(1):786. doi: 10.1186/s12864-017-4156-x.
9
The vigilante.义务警员。
Science. 2014 Mar 21;343(6177):1306-9. doi: 10.1126/science.343.6177.1306.
10
Similar Ratios of Introns to Intergenic Sequence across Animal Genomes.动物基因组中内含子与基因间序列的相似比例。
Genome Biol Evol. 2017 Jun 1;9(6):1582-1598. doi: 10.1093/gbe/evx103.

引用本文的文献

1
Regional-specific calibration enables application of computational evidence for clinical classification of 5' cis-regulatory variants in Mendelian disease.区域特异性校准使得计算证据在孟德尔疾病中 5'顺式调控变异的临床分类中的应用成为可能。
Am J Hum Genet. 2024 Jul 11;111(7):1301-1315. doi: 10.1016/j.ajhg.2024.05.002. Epub 2024 May 29.
2
Coronary Artery Disease Risk Variant Dampens the Expression of CALCRL by Reducing HSF Binding to Shear Stress Responsive Enhancer in Endothelial Cells In Vitro.冠心病风险变异体通过减少热休克因子与体外培养的内皮细胞中剪切应力反应增强子的结合来抑制CALCRL的表达。
Arterioscler Thromb Vasc Biol. 2024 Jun;44(6):1330-1345. doi: 10.1161/ATVBAHA.123.318964. Epub 2024 Apr 11.
3

本文引用的文献

1
Identification of OAF and PVRL1 as candidate genes for an ocular anomaly characterized by Peters anomaly type 2 and ectopia lentis.鉴定 OAF 和 PVRL1 为眼部异常的候选基因,该眼部异常表现为 2 型 Peters 异常和晶状体异位。
Exp Eye Res. 2018 Mar;168:161-170. doi: 10.1016/j.exer.2017.12.012. Epub 2018 Jan 2.
2
Intergenic disease-associated regions are abundant in novel transcripts.基因间疾病相关区域富含新的转录本。
Genome Biol. 2017 Dec 28;18(1):241. doi: 10.1186/s13059-017-1363-3.
3
VarCards: an integrated genetic and clinical database for coding variants in the human genome.
Integration of multi-omics technologies for molecular diagnosis in ataxia patients.
多组学技术在共济失调患者分子诊断中的整合
Front Genet. 2024 Jan 4;14:1304711. doi: 10.3389/fgene.2023.1304711. eCollection 2023.
4
A contemporary review of snoRNAs in cardiovascular health: RNA modification and beyond.心血管健康中snoRNA的当代综述:RNA修饰及其他
Mol Ther Nucleic Acids. 2023 Dec 5;35(1):102087. doi: 10.1016/j.omtn.2023.102087. eCollection 2024 Mar 12.
5
VarCards2: an integrated genetic and clinical database for ACMG-AMP variant-interpretation guidelines in the human whole genome.VarCards2:一个整合的遗传和临床数据库,用于 ACMG-AMP 变异解读指南在人类全基因组中的应用。
Nucleic Acids Res. 2024 Jan 5;52(D1):D1478-D1489. doi: 10.1093/nar/gkad1061.
6
Genome-Wide Identification of lncRNA and mRNA for Diagnosing Type 2 Diabetes in Saudi Arabia.沙特阿拉伯2型糖尿病诊断中lncRNA和mRNA的全基因组鉴定
Pharmgenomics Pers Med. 2023 Sep 15;16:859-882. doi: 10.2147/PGPM.S427977. eCollection 2023.
7
Discovery of non-reference processed pseudogenes in the Swedish population.瑞典人群中非参考加工假基因的发现。
Front Genet. 2023 May 30;14:1176626. doi: 10.3389/fgene.2023.1176626. eCollection 2023.
8
Tumour mutations in long noncoding RNAs enhance cell fitness.长非编码 RNA 中的肿瘤突变增强细胞适应性。
Nat Commun. 2023 Jun 8;14(1):3342. doi: 10.1038/s41467-023-39160-7.
9
Targeted adaptive long-read sequencing for discovery of complex phased variants in inherited retinal disease patients.靶向适应性长读测序在遗传性视网膜疾病患者中发现复杂相位变异体。
Sci Rep. 2023 May 26;13(1):8535. doi: 10.1038/s41598-023-35791-4.
10
Exploration of Tools for the Interpretation of Human Non-Coding Variants.人类非编码变异解释工具的探索。
Int J Mol Sci. 2022 Oct 26;23(21):12977. doi: 10.3390/ijms232112977.
VarCards:一个整合的遗传和临床数据库,用于人类基因组中的编码变异。
Nucleic Acids Res. 2018 Jan 4;46(D1):D1039-D1048. doi: 10.1093/nar/gkx1039.
4
Machine learning annotation of human branchpoints.基于机器学习的人类分支点标注。
Bioinformatics. 2018 Mar 15;34(6):920-927. doi: 10.1093/bioinformatics/btx688.
5
Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics.猎户座:利用群体遗传学检测人类非编码基因组中不耐受变异的区域。
PLoS One. 2017 Aug 10;12(8):e0181604. doi: 10.1371/journal.pone.0181604. eCollection 2017.
6
Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.长链非编码RNA CUPID1和CUPID2通过调节对DNA损伤的反应介导11q13处的乳腺癌风险。
Am J Hum Genet. 2017 Aug 3;101(2):255-266. doi: 10.1016/j.ajhg.2017.07.007.
7
Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family trios.利用人类家系三体型中相互的等位基因后代,评估印迹和遗传变异依赖性的单等位基因表达。
Sci Rep. 2017 Aug 1;7(1):7038. doi: 10.1038/s41598-017-07514-z.
8
Controlling gene expression by DNA mechanics: emerging insights and challenges.通过DNA力学控制基因表达:新见解与挑战
Biophys Rev. 2016 Nov;8(Suppl 1):23-32. doi: 10.1007/s12551-016-0243-5. Epub 2016 Nov 14.
9
Deep intronic mutations and human disease.内含子深处的突变与人类疾病。
Hum Genet. 2017 Sep;136(9):1093-1111. doi: 10.1007/s00439-017-1809-4. Epub 2017 May 12.
10
Cancer-associated noncoding mutations affect RNA G-quadruplex-mediated regulation of gene expression.癌症相关的非编码突变影响 RNA G-四链体介导的基因表达调控。
Sci Rep. 2017 Apr 6;7(1):708. doi: 10.1038/s41598-017-00739-y.