ARC Centre of Excellence in Convergent Bio-Nano Science & Technology (CBNS), University of South Australia, Mawson Lakes, South Australia 5095, Australia.
Future Industries Institute, University of South Australia, Mawson Lakes, South Australia 5095, Australia.
Gigascience. 2018 Oct 1;7(10):giy102. doi: 10.1093/gigascience/giy102.
Reproducibility, or a lack thereof, is an increasingly important topic across many research fields. A key aspect of reproducibility is accurate reporting of both experiments and the resulting data. Herein, we propose a reporting guideline for mass spectrometry imaging (MSI). Previous standards have laid out guidelines sufficient to guarantee a certain quality of reporting; however, they set a high bar and as a consequence can be exhaustive and broad, thus limiting uptake.To help address this lack of uptake, we propose a reporting supplement-Minimum Information About a Mass Spectrometry Imaging Experiment (MIAMSIE)-and its abbreviated reporting standard version, MSIcheck. MIAMSIE is intended to improve author-driven reporting. It is intentionally not exhaustive, but is rather designed for extensibility and could therefore eventually become analogous to existing standards that aim to guarantee reporting quality. Conversely, its abbreviated form MSIcheck is intended as a diagnostic tool focused on key aspects in MSI reporting.We discuss how existing standards influenced MIAMSIE/MSIcheck and how these new approaches could positively impact reporting quality, followed by test implementation of both standards to demonstrate their use. For MIAMSIE, we report on author reviews of four articles and a dataset. For MSIcheck, we show a snapshot review of a one-month subset of the MSI literature that indicated issues with data provision and the reporting of both data analysis steps and calibration settings for MS systems. Although our contribution is MSI specific, we believe the underlying approach could be considered as a general strategy for improving scientific reporting.
可重复性或缺乏可重复性是许多研究领域中日益重要的话题。可重复性的一个关键方面是准确报告实验和产生的数据。在此,我们提出了用于质谱成像(MSI)的报告指南。以前的标准已经制定了足够的指南,以保证报告的一定质量;但是,它们设定了很高的标准,因此可能会详尽而广泛,从而限制了采用率。为了帮助解决这种采用率低的问题,我们提出了一份报告补充材料-质谱成像实验的最低信息(MIAMSIE)及其缩写报告标准版本 MSIcheck。MIAMSIE 旨在提高作者驱动的报告。它并非详尽无遗,而是旨在具有可扩展性,因此最终可能类似于旨在保证报告质量的现有标准。相反,其缩写形式 MSIcheck 旨在作为一种诊断工具,重点关注 MSI 报告中的关键方面。我们讨论了现有标准如何影响 MIAMSIE/MSIcheck,以及这些新方法如何积极影响报告质量,然后实施了这两个标准以展示其使用。对于 MIAMSIE,我们报告了对四篇文章和一个数据集的作者评论。对于 MSIcheck,我们展示了对 MSI 文献的一个月子集的快照评论,该评论表明在数据提供以及 MS 系统的数据分析步骤和校准设置报告方面存在问题。虽然我们的贡献是针对 MSI 的,但我们相信这种方法可以被视为提高科学报告的一般策略。