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生物膜生长过程中振荡的双稳涌现

Bistable emergence of oscillations in growing biofilms.

机构信息

Department of Experimental and Health Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain.

Center for Infectious Diseases Research, School of Medicine, Tsinghua University, Beijing 100084, China.

出版信息

Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8333-E8340. doi: 10.1073/pnas.1805004115. Epub 2018 Aug 20.

Abstract

Biofilm communities of bacteria have recently been shown to exhibit collective growth-rate oscillations mediated by electrochemical signaling to cope with nutrient starvation. These oscillations emerge once the colony reaches a large enough number of cells. However, it remains unclear whether the amplitude of the oscillations, and thus their effectiveness, builds up over time gradually or if they can emerge instantly with a nonzero amplitude. Here we address this question by combining microfluidics-based time-lapse microscopy experiments with a minimal theoretical description of the system in the form of a delay-differential equation model. Analytical and numerical methods reveal that oscillations arise through a subcritical Hopf bifurcation, which enables instant high-amplitude oscillations. Consequently, the model predicts a bistable regime where an oscillating and a nonoscillating attractor coexist in phase space. We experimentally validate this prediction by showing that oscillations can be triggered by perturbing the media conditions, provided the biofilm size lies within an appropriate range. The model also predicts that the minimum size at which oscillations start decreases with stress, a fact that we also verify experimentally. Taken together, our results show that collective oscillations in cell populations can emerge suddenly with nonzero amplitude via a discontinuous transition.

摘要

细菌生物膜群落最近被证明表现出集体生长率振荡,这种振荡通过电化学信号来应对营养饥饿。这些振荡在菌落达到足够多的细胞数量后出现。然而,目前尚不清楚振荡的幅度(因此其有效性)是否随着时间的推移逐渐建立,或者它们是否可以以非零幅度即时出现。在这里,我们通过结合基于微流控的时变显微镜实验和以时滞微分方程模型形式的系统的最小理论描述来解决这个问题。分析和数值方法表明,振荡是通过亚临界 Hopf 分岔产生的,这使得高幅度的振荡可以即时出现。因此,该模型预测了一个双稳态区域,其中在相空间中存在一个振荡和一个非振荡吸引子共存。我们通过实验验证了这一预测,表明只要生物膜大小在适当范围内,通过改变介质条件就可以触发振荡。该模型还预测了起始振荡的最小尺寸随着压力的增加而减小,这一事实我们也通过实验验证。总的来说,我们的研究结果表明,通过不连续的跃迁,细胞群体中的集体振荡可以突然出现,且幅度不为零。

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