College of Veterinary Medicine, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, Republic of Korea.
College of Veterinary Medicine, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, Republic of Korea; BioCore Co., Ltd, 33 Digitalro 9-ghil, Geumcheon-gu, Seoul, Republic of Korea.
Infect Genet Evol. 2018 Nov;65:380-384. doi: 10.1016/j.meegid.2018.08.020. Epub 2018 Aug 23.
We determined a complete genome sequence of the Korean field strain, KUMC-62, of human adenovirus type 3 (HAdV-3) and performed comparative genome analyses. Interestingly HAdV-3 has a distinct genomic sequence for the fiber CDS region on average 62.46% of nucleotide sequence identity to other types of HAdV-B1, while remaining genomic region of HAdV-3 is very similar (on average 95.71% of nucleotide sequence identity) to other types of HAdV-B1. The blast results showed that the fiber CDS region of HAdV-3 exhibited the highest nucleotide sequence identity with that of simian adenovirus type 32 (SAdV-32), except other strains of HAdV-3. In the Simplot analysis, a potential recombination event was detected between HAdV-7 and SAdV-32, which might have created HAdV-3 in the past. These findings suggest that HAdV-3 highly likely was created by a natural inter-species recombination event between human and non-human primate AdVs.
我们确定了韩国田间株 KUMC-62 的人腺病毒 3 型(HAdV-3)的全基因组序列,并进行了比较基因组分析。有趣的是,HAdV-3 在纤维 CDS 区具有独特的基因组序列,与其他类型的 HAdV-B1 的核苷酸序列同一性平均为 62.46%,而 HAdV-3 的其余基因组区域与其他类型的 HAdV-B1 非常相似(平均核苷酸序列同一性为 95.71%)。blast 结果表明,HAdV-3 的纤维 CDS 区与猿猴腺病毒 32 型(SAdV-32)的核苷酸序列同一性最高,除了其他 HAdV-3 株。在 Simplot 分析中,检测到 HAdV-7 和 SAdV-32 之间可能存在重组事件,这可能导致过去产生了 HAdV-3。这些发现表明,HAdV-3 很可能是人类和非人类灵长类动物腺病毒之间自然的种间重组事件产生的。