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绿豆核酸酶对大利什曼原虫动质体微小环DNA的特异性切割及几种其他微小环序列类别的鉴定

Specific cleavage of kinetoplast minicircle DNA from Leishmania tarentolae by mung bean nuclease and identification of several additional minicircle sequence classes.

作者信息

Muhich M L, Simpson L

出版信息

Nucleic Acids Res. 1986 Jul 11;14(13):5531-56. doi: 10.1093/nar/14.13.5531.

DOI:10.1093/nar/14.13.5531
PMID:3016649
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC311557/
Abstract

Multiple sequence classes of kinetoplast minicircle DNA from Leishmania tarentolae were cleaved by mung bean nuclease in the presence of formamide, yielding unit length linear molecules which retained the anomalous electrophoretic mobility in acrylamide characteristic of minicircle DNA. No specific cleavage site sequence common to all minicircle sequence classes was apparent, although the main region of nuclease cleavage was localized approximately 350 bp from the unique SmaI restriction site of the conserved region found in all minicircle sequence classes. Covalent closure of the minicircle substrate was not a requirement for cleavage, as linearized network-derived or cloned minicircles were also cleaved by mung bean nuclease at similar locations. The partial sequences of several new minicircle sequence classes released from the network by mung bean nuclease are also reported.

摘要

来自热带利什曼原虫的动质体小环DNA的多个序列类别在甲酰胺存在的情况下被绿豆核酸酶切割,产生单位长度的线性分子,这些分子在丙烯酰胺中保留了小环DNA特有的异常电泳迁移率。尽管核酸酶切割的主要区域位于所有小环序列类别中保守区域的独特SmaI限制性位点约350 bp处,但并未发现所有小环序列类别共有的特定切割位点序列。小环底物的共价闭合不是切割的必要条件,因为线性化的网络衍生或克隆小环也会被绿豆核酸酶在相似位置切割。还报道了通过绿豆核酸酶从网络中释放的几个新小环序列类别的部分序列。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/534886a1f29e/nar00282-0420-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/376c233a03fb/nar00282-0410-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/a6a4337fd5bc/nar00282-0412-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/46fdd0a2e8e2/nar00282-0415-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/ef454fe95e5f/nar00282-0416-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/bbeff4ce5712/nar00282-0418-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/534886a1f29e/nar00282-0420-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/376c233a03fb/nar00282-0410-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/a6a4337fd5bc/nar00282-0412-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/46fdd0a2e8e2/nar00282-0415-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/ef454fe95e5f/nar00282-0416-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/bbeff4ce5712/nar00282-0418-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e7e/311557/534886a1f29e/nar00282-0420-a.jpg

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本文引用的文献

1
Kinetoplast DNA in the insect trypanosomes Crithidia luciliae and Crithidia fasciculata. III. Heteroduplex analysis of the C. luciliae minicircles.昆虫锥虫克氏锥虫和 fasciculata 锥虫中的动基体 DNA。III. 克氏锥虫微小环的异源双链分析。
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An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.一个用于比较和比对核酸及氨基酸序列的交互式图形程序。
Nucleic Acids Res. 1982 May 11;10(9):2951-61. doi: 10.1093/nar/10.9.2951.
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Rapid identification of Leishmania species by specific hybridization of kinetoplast DNA in cutaneous lesions.
绿豆核酸酶对纯化的恶性疟原虫基因组DNA表现出普遍的基因切除活性。
Nucleic Acids Res. 1988 Jul 25;16(14B):6883-96. doi: 10.1093/nar/16.14.6883.
4
Leishmania tarentolae minicircles of different sequence classes encode single guide RNAs located in the variable region approximately 150 bp from the conserved region.不同序列类别的大利什曼原虫微型环编码位于距保守区约150 bp的可变区的单向导RNA。
Nucleic Acids Res. 1991 Nov 25;19(22):6277-81. doi: 10.1093/nar/19.22.6277.
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RNA editing in trypanosomes. The us(e) of guide RNAs.锥虫中的RNA编辑。向导RNA的作用。
Mol Biol Rep. 1992 Sep;16(4):217-27. doi: 10.1007/BF00419661.
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An intergenic G-rich region in Leishmania tarentolae kinetoplast maxicircle DNA is a pan-edited cryptogene encoding ribosomal protein S12.大利什曼原虫动质体大环DNA中的一个基因间富含G的区域是一个编码核糖体蛋白S12的泛编辑隐基因。
Mol Cell Biol. 1992 Jan;12(1):56-67. doi: 10.1128/mcb.12.1.56-67.1992.
通过皮肤病变中动基体DNA的特异性杂交快速鉴定利什曼原虫种类。
Proc Natl Acad Sci U S A. 1982 Nov;79(22):6999-7003. doi: 10.1073/pnas.79.22.6999.
4
Sequences of two kinetoplast DNA minicircles of Tryptanosoma brucei.布氏锥虫两个动质体DNA微小环的序列
Proc Natl Acad Sci U S A. 1980 May;77(5):2445-9. doi: 10.1073/pnas.77.5.2445.
5
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6
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9
A convenient and adaptable package of computer programs for DNA and protein sequence management, analysis and homology determination.一套方便且适用的计算机程序包,用于DNA和蛋白质序列管理、分析及同源性测定。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):643-55. doi: 10.1093/nar/12.1part2.643.
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The nucleotide sequence of a segment of Trypanosoma brucei mitochondrial maxi-circle DNA that contains the gene for apocytochrome b and some unusual unassigned reading frames.布氏锥虫线粒体大环状DNA的一段核苷酸序列,该序列包含脱辅基细胞色素b基因和一些异常的未指定阅读框。
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