An open-source platform for analyzing and sharing worm-behavior data.
作者信息
Javer Avelino, Currie Michael, Lee Chee Wai, Hokanson Jim, Li Kezhi, Martineau Céline N, Yemini Eviatar, Grundy Laura J, Li Chris, Ch'ng QueeLim, Schafer William R, Nollen Ellen A A, Kerr Rex, Brown André E X
机构信息
MRC London Institute of Medical Sciences, London, UK.
Institute of Clinical Sciences, Imperial College London, London, UK.
出版信息
Nat Methods. 2018 Sep;15(9):645-646. doi: 10.1038/s41592-018-0112-1.
Abstract
摘要
相似文献
1
An open-source platform for analyzing and sharing worm-behavior data.一个用于分析和共享蠕虫行为数据的开源平台。
Nat Methods. 2018 Sep;15(9):645-646. doi: 10.1038/s41592-018-0112-1.
2
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata.PEPhub：一个用于编辑、共享和验证生物样本元数据的数据库、网络界面和 API。
Gigascience. 2024 Jan 2;13. doi: 10.1093/gigascience/giae033.
3
Building a collaborative global health informatics website.构建一个协作式全球健康信息学网站。
AMIA Annu Symp Proc. 2008 Nov 6:895.
4
Swimming behavior of the spoon worm Urechis unicinctus (Annelida, Echiura).短尾柱头虫游泳行为的研究（环节动物门，螠虫纲）。
Zoology (Jena). 2014 Jun;117(3):216-23. doi: 10.1016/j.zool.2013.12.001. Epub 2014 Feb 15.
5
MetaBasis: a web-based database containing metadata on software tools and databases in the field of bioinformatics.MetaBasis：一个基于网络的数据库，包含生物信息学领域软件工具和数据库的元数据。
Appl Bioinformatics. 2006;5(3):187-92. doi: 10.2165/00822942-200605030-00007.
6
iBIOMES: managing and sharing biomolecular simulation data in a distributed environment.iBIOMES：在分布式环境中管理和共享生物分子模拟数据。
J Chem Inf Model. 2013 Mar 25;53(3):726-36. doi: 10.1021/ci300524j. Epub 2013 Mar 5.
7
On the usefulness of ontologies in epidemiology research and practice.本体论在流行病学研究与实践中的作用
J Epidemiol Community Health. 2013 May;67(5):385-8. doi: 10.1136/jech-2012-201142. Epub 2012 Nov 15.
8
linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser.方便地在网络浏览器中探索、共享和展示大规模生物轨迹数据。
PLoS Comput Biol. 2021 Nov 1;17(11):e1009503. doi: 10.1371/journal.pcbi.1009503. eCollection 2021 Nov.
9
Ten Simple Rules for organizing a non-real-time web conference.组织非实时网络会议的十条简单规则。
PLoS Comput Biol. 2020 Mar 26;16(3):e1007667. doi: 10.1371/journal.pcbi.1007667. eCollection 2020 Mar.
10
The sleight-of-hand trick that can simplify scientific computing.能够简化科学计算的巧妙技巧。
Nature. 2023 May;617(7959):212-213. doi: 10.1038/d41586-023-01469-0.
引用本文的文献
1
: A Software Suite for Quantifying Properties of Locomotion, Bending, Sleep, and Action Potentials.用于量化运动、弯曲、睡眠和动作电位特性的软件套件。
eNeuro. 2025 Aug 27;12(8). doi: 10.1523/ENEURO.0224-25.2025. Print 2025 Aug.
2
A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.一种神经网络模型能够在具有挑战性的条件下实现线虫追踪，并提高表型筛选中的信噪比。
PLoS Comput Biol. 2025 Aug 8;21(8):e1013345. doi: 10.1371/journal.pcbi.1013345. eCollection 2025 Aug.
3
High-throughput behavioral screening in Caenorhabditis elegans using machine learning for drug repurposing.利用机器学习在秀丽隐杆线虫中进行高通量行为筛选以实现药物再利用。
Sci Rep. 2025 Jul 18;15(1):26140. doi: 10.1038/s41598-025-10370-x.
4
A high precision method of segmenting complex postures in Caenorhabditis elegans and deep phenotyping to analyze lifespan.一种用于秀丽隐杆线虫复杂姿势分割和深度表型分析以研究寿命的高精度方法。
Sci Rep. 2025 Mar 14;15(1):8870. doi: 10.1038/s41598-025-93533-0.
5
Identification of a key peptide cyclase for novel cyclic peptide discovery in Pseudostellaria heterophylla.太子参中用于发现新型环肽的关键肽环化酶的鉴定
Plant Commun. 2025 May 12;6(5):101315. doi: 10.1016/j.xplc.2025.101315. Epub 2025 Mar 13.
6
High-throughput tracking enables systematic phenotyping and drug repurposing in disease models.高通量追踪能够在疾病模型中实现系统的表型分析和药物重新利用。
Elife. 2025 Jan 8;12:RP92491. doi: 10.7554/eLife.92491.
7
An integrative data-driven model simulating C. elegans brain, body and environment interactions.一个整合的数据驱动模型，用于模拟秀丽隐杆线虫的大脑、身体和环境之间的相互作用。
Nat Comput Sci. 2024 Dec;4(12):978-990. doi: 10.1038/s43588-024-00738-w. Epub 2024 Dec 16.
8
N-glycan core tri-fucosylation requires Golgi α-mannosidase III activity that impacts nematode growth and behavior.N-聚糖核心三岩藻糖基化需要高尔基体α-甘露糖苷酶III的活性，该活性会影响线虫的生长和行为。
J Biol Chem. 2024 Dec;300(12):107944. doi: 10.1016/j.jbc.2024.107944. Epub 2024 Oct 29.
9
: A Software Suite for Quantifying Properties of Locomotion, Bending, Sleep, and Action Potentials.用于量化运动、弯曲、睡眠和动作电位特性的软件套件。
bioRxiv. 2024 Sep 15:2024.09.12.612524. doi: 10.1101/2024.09.12.612524.
10
Muscular expression of differentially contributes to swimming and crawling production in the nematode .在该线虫中，肌肉表达差异对游泳和爬行行为的产生有不同贡献。
bioRxiv. 2024 Aug 16:2024.08.13.607367. doi: 10.1101/2024.08.13.607367.
本文引用的文献
1
Big behavioral data: psychology, ethology and the foundations of neuroscience.大行为数据：心理学、动物行为学和神经科学基础。
Nat Neurosci. 2014 Nov;17(11):1455-62. doi: 10.1038/nn.3812. Epub 2014 Oct 28.
2
A database of Caenorhabditis elegans behavioral phenotypes.秀丽隐杆线虫行为表型数据库。
Nat Methods. 2013 Sep;10(9):877-9. doi: 10.1038/nmeth.2560. Epub 2013 Jul 14.
3
High-throughput behavioral analysis in C. elegans.秀丽隐杆线虫的高通量行为分析。
Nat Methods. 2011 Jun 5;8(7):592-8. doi: 10.1038/nmeth.1625.
4
The Parallel Worm Tracker: a platform for measuring average speed and drug-induced paralysis in nematodes.平行线虫追踪器：一种用于测量线虫平均速度和药物诱导麻痹的平台。
PLoS One. 2008 May 21;3(5):e2208. doi: 10.1371/journal.pone.0002208.
Zotero 插件