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本文引用的文献

1
The C-terminal region of translesion synthesis DNA polymerase η is partially unstructured and has high conformational flexibility.跨损伤合成 DNA 聚合酶 η 的 C 末端区域部分无规则,构象灵活性高。
Nucleic Acids Res. 2018 Feb 28;46(4):2107-2120. doi: 10.1093/nar/gky031.
2
Analyzing the Catalytic Activities and Interactions of Eukaryotic Translesion Synthesis Polymerases.分析真核生物跨损伤合成聚合酶的催化活性及相互作用。
Methods Enzymol. 2017;592:329-356. doi: 10.1016/bs.mie.2017.04.002. Epub 2017 May 8.
3
Eukaryotic Translesion DNA Synthesis on the Leading and Lagging Strands: Unique Detours around the Same Obstacle.真核生物前导链和后随链上的跨损伤DNA合成:绕过同一障碍的独特路径
Chem Rev. 2017 Jun 28;117(12):7857-7877. doi: 10.1021/acs.chemrev.7b00046. Epub 2017 May 12.
4
Forging Ahead through Darkness: PCNA, Still the Principal Conductor at the Replication Fork.在黑暗中奋勇前行:增殖细胞核抗原,依然是复制叉处的主要指挥者。
Mol Cell. 2017 Feb 2;65(3):380-392. doi: 10.1016/j.molcel.2016.12.020.
5
R.I.P. to the PIP: PCNA-binding motif no longer considered specific: PIP motifs and other related sequences are not distinct entities and can bind multiple proteins involved in genome maintenance.增殖细胞核抗原结合基序(PIP)安息吧:不再被视为特异性结合基序:PIP基序及其他相关序列并非独立存在的实体,且可结合多种参与基因组维持的蛋白质。
Bioessays. 2016 Nov;38(11):1117-1122. doi: 10.1002/bies.201600116. Epub 2016 Aug 19.
6
PCNA tool belts and polymerase bridges form during translesion synthesis.增殖细胞核抗原(PCNA)工具带和聚合酶桥在跨损伤合成过程中形成。
Nucleic Acids Res. 2016 Sep 30;44(17):8250-60. doi: 10.1093/nar/gkw563. Epub 2016 Jun 20.
7
The Many Roles of PCNA in Eukaryotic DNA Replication.增殖细胞核抗原在真核生物DNA复制中的多种作用
Enzymes. 2016;39:231-54. doi: 10.1016/bs.enz.2016.03.003. Epub 2016 Apr 19.
8
The Proliferating Cell Nuclear Antigen (PCNA)-interacting Protein (PIP) Motif of DNA Polymerase η Mediates Its Interaction with the C-terminal Domain of Rev1.DNA聚合酶η的增殖细胞核抗原(PCNA)相互作用蛋白(PIP)基序介导其与Rev1 C末端结构域的相互作用。
J Biol Chem. 2016 Apr 15;291(16):8735-44. doi: 10.1074/jbc.M115.697938. Epub 2016 Feb 22.
9
REV1 promotes PCNA monoubiquitylation through interacting with ubiquitylated RAD18.REV1通过与泛素化的RAD18相互作用促进增殖细胞核抗原(PCNA)的单泛素化。
J Cell Sci. 2016 Mar 15;129(6):1223-33. doi: 10.1242/jcs.179408. Epub 2016 Jan 21.
10
Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins.流体动力学相互作用对蛋白质模拟扩散和折叠的显著影响。
J Chem Theory Comput. 2009 Feb 10;5(2):242-56. doi: 10.1021/ct800499p.

真核生物跨损伤合成:为工作选择合适的工具。

Eukaryotic translesion synthesis: Choosing the right tool for the job.

机构信息

Department of Biochemistry, University of Iowa College of Medicine, Iowa City, IA 52242-1109, United States.

Department of Biochemistry, University of Iowa College of Medicine, Iowa City, IA 52242-1109, United States.

出版信息

DNA Repair (Amst). 2018 Nov;71:127-134. doi: 10.1016/j.dnarep.2018.08.016. Epub 2018 Aug 24.

DOI:10.1016/j.dnarep.2018.08.016
PMID:30174299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6340752/
Abstract

Normal DNA replication is blocked by DNA damage in the template strand. Translesion synthesis is a major pathway for overcoming these replication blocks. In this process, multiple non-classical DNA polymerases are thought to form a complex at the stalled replication fork that we refer to as the mutasome. This hypothetical multi-protein complex is structurally organized by the replication accessory factor PCNA and the non-classical polymerase Rev1. One of the non-classical polymerases within this complex then catalyzes replication through the damage. Each non-classical polymerase has one or more cognate lesions, which the enzyme bypasses with high accuracy and efficiency. Thus, the accuracy and efficiency of translesion synthesis depends on which non-classical polymerase is chosen to bypass the damage. In this review article, we discuss how the most appropriate polymerase is chosen. In so doing, we examine the structural motifs that mediate the protein interactions in the mutasome; the multiple architectures that the mutasome can adopt, such as PCNA tool belts and Rev1 bridges; the intrinsically disordered regions that tether the polymerases to PCNA and to one another; and the kinetic selection model in which the most appropriate polymerase is chosen via a competition among the multiple polymerases within the mutasome.

摘要

正常的 DNA 复制会被模板链上的 DNA 损伤所阻断。跨损伤合成是克服这些复制障碍的主要途径。在这个过程中,多个非经典 DNA 聚合酶被认为在停滞的复制叉处形成一个复合物,我们称之为突变体。这个假设的多蛋白复合物由复制辅助因子 PCNA 和非经典聚合酶 Rev1 结构组织。该复合物中的一个非经典聚合酶随后催化通过损伤的复制。每个非经典聚合酶都有一个或多个对应的损伤,该酶可以高度准确和有效地绕过这些损伤。因此,跨损伤合成的准确性和效率取决于选择哪种非经典聚合酶来绕过损伤。在这篇综述文章中,我们讨论了如何选择最合适的聚合酶。在这样做的过程中,我们研究了介导突变体中蛋白质相互作用的结构基序;突变体可以采用的多种结构,如 PCNA 工具带和 Rev1 桥;将聚合酶与 PCNA 和彼此连接的固有无序区域;以及通过突变体中多个聚合酶之间的竞争选择最合适聚合酶的动力学选择模型。