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新种白根瘤菌,从敌稗污染土壤中分离得到。

Rhizobium album sp. nov., isolated from a propanil-contaminated soil.

作者信息

Hang Ping, Zhang Long, Zhou Xi-Yi, Hu Qiang, Jiang Jian-Dong

机构信息

Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2019 Feb;112(2):319-327. doi: 10.1007/s10482-018-1160-3. Epub 2018 Sep 3.

Abstract

A novel Gram-stain negative, facultatively anaerobic, non-spore-forming, motile and rod-shaped bacterium (NS-104) was isolated from a propanil-contaminated soil in Nanjing, China. Growth occurred at pH 5.0-9.0 (optimum 6.0), 16-37 °C (optimum 30 °C) and in the presence of 0-2.0% (w/v) NaCl (optimum, without NaCl). Strain NS-104 showed high 16S rRNA gene sequence identity to Rhizobium azooxidifex DSM 100211 (96.7%). The phylogenetic analysis of the 16S rRNA gene as well as the housekeeping genes recA, atpD and glnA demonstrated that strain NS-104 belongs to the genus Rhizobium. Strain NS-104 did not form nodules on six different legumes, and the nodD, nodC and nifH genes were neither amplified by PCR nor found in the draft genome of strain NS-104. The sole respiratory quinone was ubiquinone Q-10. The polar lipid profile included the major amounts phosphatidylmonomethylethanolamine, phosphatidylglycerol and moderate amounts of phosphatidylethanolamine, phosphatidylcholine, diphosphatidylglycerol and unidentified aminolipids. The major cellular fatty acids were Cω7c (39.6%), C cyclo ω8c (29.8%) and C (11.5%). The G + C content of strain NS-104 was 61.9 mol%. Strain NS-104 therefore represents a new species, for which the name Rhizobium album sp. nov. is proposed, with the type strain NS-104 (= KCTC 62327 = CCTCC AB 2017250).

摘要

从中国南京受敌稗污染的土壤中分离出一株新型革兰氏阴性、兼性厌氧、无芽孢、具运动性的杆状细菌(NS-104)。该菌在pH 5.0 - 9.0(最适pH 6.0)、16 - 37℃(最适温度30℃)以及0 - 2.0%(w/v)NaCl(最适条件为无NaCl)的环境中生长。菌株NS-104与偶氮氧化根瘤菌DSM 100211的16S rRNA基因序列相似度较高(96.7%)。对16S rRNA基因以及看家基因recA、atpD和glnA的系统发育分析表明,菌株NS-104属于根瘤菌属。菌株NS-104在六种不同豆科植物上均未形成根瘤,且通过PCR未扩增出nodD、nodC和nifH基因,在菌株NS-104的草图基因组中也未发现这些基因。唯一的呼吸醌为泛醌Q-10。极性脂质谱包括大量的磷脂酰单甲基乙醇胺、磷脂酰甘油以及适量的磷脂酰乙醇胺、磷脂酰胆碱、二磷脂酰甘油和未鉴定的氨基脂质。主要的细胞脂肪酸为Cω7c(39.6%)、C环ω8c(29.8%)和C(11.5%)。菌株NS-104的G + C含量为61.9 mol%。因此,菌株NS-104代表一个新物种,提议将其命名为白根瘤菌(Rhizobium album sp. nov.),模式菌株为NS-104(= KCTC 62327 = CCTCC AB 2017250)。

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