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解脲稻叶微杆菌属,新属,新种,一种根瘤菌科内新型的解磷和产铁载体细菌。

Oryzifoliimicrobium ureilyticus gen. nov., sp. nov., a Novel Phosphate-Solubilizing and Siderophore-Producing Bacterium Within the Family Rhizobiaceae.

作者信息

Liu Guo-Hong, Yao Ling, Gao Peng, Zhang Shu-Qun, Li Bing, Rensing Christopher, Li Wen-Qing, Zhou Shun-Gui

机构信息

Institute of Resources, Environment and Soil Fertilizer, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, 350003, People's Republic of China.

Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, People's Republic of China.

出版信息

Curr Microbiol. 2025 Jul 24;82(9):406. doi: 10.1007/s00284-025-04376-x.

DOI:10.1007/s00284-025-04376-x
PMID:40705146
Abstract

A Gram-stain-negative, rod-shaped, strictly aerobic bacterium strain SG148, within the family Rhizobiaceae, was isolated from rice leaves collected in Fujian Province, China. Phylogenetic analysis utilizing 16S rRNA gene sequences revealed that strain SG148 displayed a high sequence similarity of 95.2-95.8% to the strains of closely related species of Shinella and Rhizobium. The highest digital DNA-DNA hybridization (dDDH), core-proteome average amino acid identity (cpAAI), and average nucleotide identity (ANI) values between strain SG148 and related strains were estimated as 20.7%, 79.3%, and 73.7%, respectively. The predominant respiratory quinones in strain SG148 were identified as Q-9 and Q-10, while major polar lipids included diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, and phosphatidylethanolamine. Additionally, strain SG148 was capable of phosphate-solubilizing and siderophore-producing carrier, significantly promoting rice seedling growth. The DNA G + C content was determined to be 56.1%. Given its distinct phylogenetic and phenotypic characteristics, strain SG148 is considered to represent a novel genus, for which the name Oryzifoliimicrobium ureilyticus gen. nov., sp. nov. is proposed. The type strain is SG148 (= MCCC 1K08901 = KCTC 8337).

摘要

从中国福建省采集的水稻叶片中分离出一株革兰氏染色阴性、杆状、严格需氧的细菌菌株SG148,属于根瘤菌科。利用16S rRNA基因序列进行的系统发育分析表明,菌株SG148与希内拉属和根瘤菌属密切相关物种的菌株显示出95.2 - 95.8%的高序列相似性。菌株SG148与相关菌株之间的最高数字DNA - DNA杂交(dDDH)、核心蛋白质组平均氨基酸同一性(cpAAI)和平均核苷酸同一性(ANI)值分别估计为20.7%、79.3%和73.7%。菌株SG148中的主要呼吸醌被鉴定为Q - 9和Q - 10,而主要极性脂类包括双磷脂酰甘油、磷脂酰胆碱、磷脂酰甘油和磷脂酰乙醇胺。此外,菌株SG148能够溶解磷酸盐并产生铁载体,显著促进水稻幼苗生长。DNA G + C含量测定为56.1%。鉴于其独特的系统发育和表型特征,菌株SG148被认为代表一个新属,为此提出新属名解脲稻叶微菌属(Oryzifoliimicrobium),新种名解脲稻叶微菌(Oryzifoliimicrobium ureilyticus)。模式菌株为SG148(= MCCC 1K08901 = KCTC 8337)。

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本文引用的文献

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Setting new boundaries of 16S rRNA gene identity for prokaryotic taxonomy.设定原核生物分类学中16S rRNA基因同一性的新界限。
Int J Syst Evol Microbiol. 2025 Apr;75(4). doi: 10.1099/ijsem.0.006747.
2
Crenobacter oryzisoli sp. nov., a novel phosphate-solubilizing bacterium isolated from the paddy soil.解淀粉芽胞杆菌,一株新的解磷细菌,从稻田土壤中分离得到。
Arch Microbiol. 2024 Jul 2;206(7):337. doi: 10.1007/s00203-024-04070-9.
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Description of Flavimaribacter sediminis gen. nov., sp. nov., a New Member of the Family Rhizobiaceae Isolated from Marine Sediment.
描述 Flavimaribacter sediminis 属,新种,是从海洋沉积物中分离出来的 Rhizobiaceae 科的一个新成员。
Curr Microbiol. 2023 Jul 26;80(9):301. doi: 10.1007/s00284-023-03402-0.
4
Bacillus litorisediminis sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment.新种嗜热红树林沉积物芽孢杆菌,一种从红树林沉积物中分离出的嗜热细菌。
Curr Microbiol. 2023 Jan 19;80(2):79. doi: 10.1007/s00284-023-03180-9.
5
Rhizobium quercicola sp. nov., isolated from the leaf of Quercus variablis in China.栎生根瘤菌(Rhizobium quercicola),从中国栓皮栎的叶片中分离得到。
Arch Microbiol. 2022 Sep 2;204(9):596. doi: 10.1007/s00203-022-03188-y.
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bZIP72 promotes submerged rice seed germination and coleoptile elongation by activating ADH1.bZIP72 通过激活 ADH1 促进淹没水稻种子萌发和胚芽鞘伸长。
Plant Physiol Biochem. 2021 Dec;169:112-118. doi: 10.1016/j.plaphy.2021.11.005. Epub 2021 Nov 6.
7
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes.TYGS 和 LPSN:用于快速可靠的基于基因组的原核生物分类和命名的数据库串联。
Nucleic Acids Res. 2022 Jan 7;50(D1):D801-D807. doi: 10.1093/nar/gkab902.
8
MEGA11: Molecular Evolutionary Genetics Analysis Version 11.MEGA11:分子进化遗传学分析版本 11。
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. doi: 10.1093/molbev/msab120.
9
List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ.《具有命名地位的原核生物名称列表》(LPSN)迁至 DSMZ。
Int J Syst Evol Microbiol. 2020 Nov;70(11):5607-5612. doi: 10.1099/ijsem.0.004332. Epub 2020 Jul 23.
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Ciceribacter ferrooxidans sp. nov., a nitrate-reducing Fe(II)-oxidizing bacterium isolated from ferrous ion-rich sediment.希氏古菌属 Ciceribacter ferrooxidans sp. nov.,一种从富含亚铁离子的沉积物中分离到的硝酸盐还原型 Fe(II)氧化细菌。
J Microbiol. 2020 May;58(5):350-356. doi: 10.1007/s12275-020-9471-2. Epub 2020 Apr 27.